PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG011414.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 132aa MW: 15263.7 Da PI: 8.5253 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.8 | 1.4e-11 | 7 | 96 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+l+ps+v+ l++p + +e++ +g + d + + W++ l+ r+++ + ++l++ W +Fv+++gL + D vvF +++++ CCG011414.3 7 FSKKLKPSHVSHA--LSIPIDVLEAFpipDGA--HMMNFEAVDATDNAWRFCLSTRRTGAHpkpVLLRSSWHRFVEQKGLVTEDRVVFFMERNE 96 7899988888754..9*********9776444..344566668999*******88777777899***********************9877654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-14 | 3 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-13 | 3 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.24E-10 | 5 | 96 | No hit | No description |
Pfam | PF02362 | 1.4E-8 | 7 | 96 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0066 | 7 | 112 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MAQVHLFSKK LKPSHVSHAL SIPIDVLEAF PIPDGAHMMN FEAVDATDNA WRFCLSTRRT 60 GAHPKPVLLR SSWHRFVEQK GLVTEDRVVF FMERNEANDM LRRYTVRAQR KVMTLMGQDV 120 WVDVEDLPLY GL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216593 | 1e-178 | AC216593.1 Populus trichocarpa clone POP016-L16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011007873.1 | 9e-80 | PREDICTED: uncharacterized protein LOC105113408 | ||||
TrEMBL | A0A3N7H3I5 | 1e-82 | A0A3N7H3I5_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_027512m | 1e-47 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13907 | 2 | 9 |