PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011365.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 329aa    MW: 36358.1 Da    PI: 5.1195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011365.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH573.4e-184089255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 r +h+e E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  CCG011365.2 40 RSKHSETEQRRRSKINERFQALRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 89
                 899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-2435109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-2037109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.723888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-154089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.91E-174093No hitNo description
SMARTSM003533.7E-144494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MVKSAKSQLD EEDEPEDYDS SSYKVKPESK SSEPKANANR SKHSETEQRR RSKINERFQA  60
LRDLIPQNDQ KRDKASFLLE VIEYIQFLQE KLQMYEGSYE GWSQEPAKLL PWKIDRASAE  120
SLLDHTQVMK NGSAHENSVM LANVHNSIES DMGTAAMYKT LDHSHGPTNP AIPFDVQTPS  180
NVFAAVGRGG LPTQSLQESV SDVENMAYQL QSQLLHGRPC ATECSTPNNT LNGQEDLASD  240
SLSVNISNAY SQQILNTLTQ ALQSSGVDLA QTSIGVQIDV GKRENSTTAV APSSKVNQYL  300
SNQLIVQDGA GSSAENSEQA HKRPRREKC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999419.10.0PREDICTED: transcription factor BIM2-like isoform X1
TrEMBLU5GF360.0U5GF36_POPTR; Uncharacterized protein
STRINGPOPTR_0004s11180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-59BES1-interacting Myc-like protein 2