PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011346.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 321aa    MW: 35949.3 Da    PI: 9.9703
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011346.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.91.9e-29143215158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk...............ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RRq+Rak+e e+k               + +++ +pylheSRh hA+rR+Rg+gGrF
  CCG011346.2 143 EEPVYVNAKQYHGILRRRQSRAKAELERKliktrklqtmfrafsVLTHASQPYLHESRHLHAMRRARGCGGRF 215
                  69******************************************779*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.3E-30141218IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.303142218IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-25144215IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860147167IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MQKTLDSTVT TNYPLSSPSK PWWCSIGHDA IFSNVLGEST KNLSLQESTD DGLGTKASKP  60
HGNVQMDGGT VAYKEKQLNA VSESGDFRIL FEGPYWNDSK HGKYGDHHHP QQTASKTIPA  120
MGVHSQYAGP NPARMVLPHE MAEEPVYVNA KQYHGILRRR QSRAKAELER KLIKTRKLQT  180
MFRAFSVLTH ASQPYLHESR HLHAMRRARG CGGRFLNTKK PDTTNNTAPD KHISSDETVS  240
RNFTSSSSSG PVPSRFSRNS DSSMSKDAEV IESLCQMHPH QTCEQRMHPA VSQVSPFQIS  300
FTFRKDGGRK GSQREQIMVI E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-17143229272NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020342.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like
TrEMBLA0A2K1ZX791e-158A0A2K1ZX79_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05210.11e-159(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2298744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-32nuclear factor Y, subunit A7