PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG011194.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 220aa MW: 25437.4 Da PI: 8.4809 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.1e-19 | 89 | 143 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+++++++ +++ +A++l+L+ rqV vWFqNrRa+ k CCG011194.1 89 RKKLRLTKDQSSYLEESFRRHPTLNPAKKHAIAEQLNLKPRQVEVWFQNRRARTK 143 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 120.9 | 6.7e-39 | 89 | 178 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q++ LEesF+++ +L+p +K+++a++L+l+prqv+vWFqnrRARtk+kq+E d+e Lk+++++l++en+rL++e +eLr++ CCG011194.1 89 RKKLRLTKDQSSYLEESFRRHPTLNPAKKHAIAEQLNLKPRQVEVWFQNRRARTKLKQTEADCELLKKCCESLSNENRRLKRELQELRSQ 178 69*************************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-19 | 75 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.795 | 85 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-16 | 87 | 149 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-18 | 89 | 143 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.20E-14 | 89 | 146 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 89 | 143 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.1E-17 | 145 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 7.5E-9 | 145 | 179 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MEEEGYCNTR LGLGLGGENY VPWPQKQKEK PVVRLDLSFT LWPDQEDSRN IDRHDKAEGT 60 CFKSEEDEDY GNKRSDHSID NSCMYGTGRK KLRLTKDQSS YLEESFRRHP TLNPAKKHAI 120 AEQLNLKPRQ VEVWFQNRRA RTKLKQTEAD CELLKKCCES LSNENRRLKR ELQELRSQKT 180 GRSSSSSSSH SQLAKDIGTI TKCPSCEEST TTDQKICSRF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 145 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011020097.1 | 1e-163 | PREDICTED: homeobox-leucine zipper protein HAT14-like | ||||
Swissprot | A2XE76 | 4e-47 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | P46665 | 4e-47 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
Swissprot | Q8GRL4 | 4e-47 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | B9HAM6 | 1e-146 | B9HAM6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s07100.1 | 1e-147 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 5e-48 | homeobox from Arabidopsis thaliana |