PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011157.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-PHD
Protein Properties Length: 726aa    MW: 81956.4 Da    PI: 9.8769
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011157.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox322.1e-10508552953
                  HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
     Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  ++ +e L ++F +n  ps++ +e L+k+lgL+  +V+ WF+N R+
  CCG011157.1 508 PDAVEKLRQVFVENELPSRTVKENLSKELGLEPGKVSKWFKNSRY 552
                  67899**************************************97 PP
2PHD32.32.3e-11241294150
                  SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS.TBSSHHHHT CS
          PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg.ewlCeeCke 50 
                  +C+ C+      ++++vlCd +C+ +fH+kCl+++l++e  p +  w+C+ C++
  CCG011157.1 241 FCAKCKLneVSPDNDIVLCDgTCNCAFHQKCLEPPLDTEIPPGDqGWFCKFCEC 294
                  699998865556********56**************966655559*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.2E-13233297IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.0E-10237294IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.309239295IPR019787Zinc finger, PHD-finger
PfamPF006287.9E-9241294IPR019787Zinc finger, PHD-finger
SMARTSM002492.0E-7241293IPR001965Zinc finger, PHD-type
CDDcd155041.92E-29241292No hitNo description
PROSITE patternPS013590242292IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466891.75E-10493552IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-12493551IPR009057Homeodomain-like
PROSITE profilePS5007112.39497557IPR001356Homeobox domain
SMARTSM003898.5E-10499561IPR001356Homeobox domain
CDDcd000867.63E-9500559No hitNo description
PfamPF000466.3E-8508552IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MGDSGKTSKL QDSHKCSPSD TVTGSLLIKS LKIKKDSKMS PRKGQKTKTK SKPKPKPIPH  60
LKSIISSAVS KRKVSPKGIG NGSTSRKLIH RKILHKALDK KASRKGASSE LQLSTIDSKG  120
NGKNGDEGAI KKLKKRKPKK RQRDKVKLDE PSRLQRRARY LMIKMKLDQN LIDAYSGEGW  180
KGQSREKIRP EKELLRARKQ ILKCKLGLRD IIRQVDSLST VGCIEETVMA PDGSVSHEHI  240
FCAKCKLNEV SPDNDIVLCD GTCNCAFHQK CLEPPLDTEI PPGDQGWFCK FCECRMDIIE  300
AMNAHLGTHF SEDSSWQDIF TEAAAIPDAG NVLLNPEEEW PSDDSEDDNY DPERRDNIMS  360
EACTDNDASD DISSSTSLGW SSDGEVFLGS RRWEMHGLDF RNNSIYSSLD SDETSDGEIV  420
CGRRQRRAID YKMLYDEVFG KDAPANEQAS EDEDWGPGKR KRREKESNAA STLMTLCESE  480
KKSKSDETIE GMMKLPPQTR RPIFRLPPDA VEKLRQVFVE NELPSRTVKE NLSKELGLEP  540
GKVSKWFKNS RYLALKSRKV EKGEQLHNSS SKVSAEPTLN VREGKTADLS QDSWEETEVC  600
IPKNLKRILQ RKKPKSISRS SRKNEQKRGS YESPTKSNEM NAECSDDVSL KKLLKAKPKE  660
VKKKVNPIST AAEYDMERLC RAKAILEKMK QKVVKLQNGK ARKSSKTRPR EEFIVYIPIA  720
ELRGKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136KKLKKRK
2459464RKRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020025.10.0PREDICTED: pathogenesis-related homeodomain protein-like isoform X2
SwissprotP487851e-154PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A3N7F8P30.0A0A3N7F8P3_POPTR; Uncharacterized protein
STRINGPOPTR_0006s07520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-151pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]