PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011071.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 749aa    MW: 85006.1 Da    PI: 7.3591
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011071.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3864.4e-1183737441374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cA+a++++d + a+ lL++++ ++sp gd ++Rla++f+ +L+arla+++s++yk l +++ts    ++ l+a++l+  ++P+ k+s+++ 
  CCG011071.1 373 LRTLLINCAQAIAADDRRSANDLLKQIRLHSSPFGDGNRRLAHCFADGLEARLAGTGSQIYKGLVSKKTS---AADLLKAYRLYLAACPFRKVSNFVS 467
                  6789***************************************************************999...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++I   +e+++r+H+iDf+i +G+QWp++++ L++Rp+gpp+lR+Tg++ p++g   +e++eetg+rLa +A+e++vpfe+n+ +ak++e+++leeL
  CCG011071.1 468 NKTIKITAENSTRLHVIDFGILYGFQWPTFIHRLSCRPGGPPKLRMTGIEFPQPGfrPAERVEETGHRLAAYAKEFKVPFEYNA-IAKKWETIQLEEL 564
                  ******************************************************9*****************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +++++E+++Vn+ ++ ++llde+v+++s+r+ vL+lv++++P+++++   +  +n++ +++rf eal ++sa+fd+le+ +pre+ er ++E+e++gr
  CCG011071.1 565 KIDRDEVVVVNCLYRSKNLLDETVAVDSPRNIVLDLVRKINPEIFIHGITNGAYNAPFYVTRFREALFHFSAMFDMLETIVPREELERLVIEKEIFGR 662
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e+ nv+aceg er+er et+++W+ r  +aGF +++++++++kqa   +r+ + + +  +e+s +l++gWk+r ++++SaW+
  CCG011071.1 663 EALNVIACEGWERVERPETYKQWQVRCLRAGFVQLSFDQEIVKQATVKVRQNYHKDFLFDEDSRWLFQGWKGRIIYTLSAWK 744
                  *****************************************************888*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.99347724IPR005202Transcription factor GRAS
PfamPF035141.5E-115373744IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MDPRLRGYSI SINGTQLGNQ PISVFSNQDL VSRPRFENTF VDHNCKEFHY IPPYPKPTDV  60
TPYSNPTQKE DSPEDFDFSD VTLRYINQML MEEDTEDKTC MLQDSLDLQV AEKSFYDVLG  120
KKYPPSPEPN PTFISQNREN LPDSLPCNYI CSSRSDSGYV DDNAWIHNPS DYHSFQLQIP  180
HVSSISQSSC SSSNSVITTV DGLVDSPSSN FKVPDWSGES RSILHFRKGV EEASRFLPSG  240
NDLFLNIEAN KFLSQEPKVR TGEVAIKVEK QDGGEHSPSG PRGKKNPHRE EGDVEEGRSS  300
KQLAVYTEST LRSDMFDKVL LCMPGEGQPD LKALREAFKS ASIINEQNGQ AKGSSGGKGR  360
GKKQSGKREM VDLRTLLINC AQAIAADDRR SANDLLKQIR LHSSPFGDGN RRLAHCFADG  420
LEARLAGTGS QIYKGLVSKK TSAADLLKAY RLYLAACPFR KVSNFVSNKT IKITAENSTR  480
LHVIDFGILY GFQWPTFIHR LSCRPGGPPK LRMTGIEFPQ PGFRPAERVE ETGHRLAAYA  540
KEFKVPFEYN AIAKKWETIQ LEELKIDRDE VVVVNCLYRS KNLLDETVAV DSPRNIVLDL  600
VRKINPEIFI HGITNGAYNA PFYVTRFREA LFHFSAMFDM LETIVPREEL ERLVIEKEIF  660
GREALNVIAC EGWERVERPE TYKQWQVRCL RAGFVQLSFD QEIVKQATVK VRQNYHKDFL  720
FDEDSRWLFQ GWKGRIIYTL SAWKPAKRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-513567451379Protein SCARECROW
5b3h_D2e-513567451379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019852.10.0PREDICTED: scarecrow-like protein 9 isoform X1
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A3N7F3E70.0A0A3N7F3E7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s08690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein