PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG011071.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 749aa MW: 85006.1 Da PI: 7.3591 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 386 | 4.4e-118 | 373 | 744 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+a++++d + a+ lL++++ ++sp gd ++Rla++f+ +L+arla+++s++yk l +++ts ++ l+a++l+ ++P+ k+s+++ CCG011071.1 373 LRTLLINCAQAIAADDRRSANDLLKQIRLHSSPFGDGNRRLAHCFADGLEARLAGTGSQIYKGLVSKKTS---AADLLKAYRLYLAACPFRKVSNFVS 467 6789***************************************************************999...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I +e+++r+H+iDf+i +G+QWp++++ L++Rp+gpp+lR+Tg++ p++g +e++eetg+rLa +A+e++vpfe+n+ +ak++e+++leeL CCG011071.1 468 NKTIKITAENSTRLHVIDFGILYGFQWPTFIHRLSCRPGGPPKLRMTGIEFPQPGfrPAERVEETGHRLAAYAKEFKVPFEYNA-IAKKWETIQLEEL 564 ******************************************************9*****************************.7************ PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+++Vn+ ++ ++llde+v+++s+r+ vL+lv++++P+++++ + +n++ +++rf eal ++sa+fd+le+ +pre+ er ++E+e++gr CCG011071.1 565 KIDRDEVVVVNCLYRSKNLLDETVAVDSPRNIVLDLVRKINPEIFIHGITNGAYNAPFYVTRFREALFHFSAMFDMLETIVPREELERLVIEKEIFGR 662 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e+ nv+aceg er+er et+++W+ r +aGF +++++++++kqa +r+ + + + +e+s +l++gWk+r ++++SaW+ CCG011071.1 663 EALNVIACEGWERVERPETYKQWQVRCLRAGFVQLSFDQEIVKQATVKVRQNYHKDFLFDEDSRWLFQGWKGRIIYTLSAWK 744 *****************************************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.99 | 347 | 724 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-115 | 373 | 744 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MDPRLRGYSI SINGTQLGNQ PISVFSNQDL VSRPRFENTF VDHNCKEFHY IPPYPKPTDV 60 TPYSNPTQKE DSPEDFDFSD VTLRYINQML MEEDTEDKTC MLQDSLDLQV AEKSFYDVLG 120 KKYPPSPEPN PTFISQNREN LPDSLPCNYI CSSRSDSGYV DDNAWIHNPS DYHSFQLQIP 180 HVSSISQSSC SSSNSVITTV DGLVDSPSSN FKVPDWSGES RSILHFRKGV EEASRFLPSG 240 NDLFLNIEAN KFLSQEPKVR TGEVAIKVEK QDGGEHSPSG PRGKKNPHRE EGDVEEGRSS 300 KQLAVYTEST LRSDMFDKVL LCMPGEGQPD LKALREAFKS ASIINEQNGQ AKGSSGGKGR 360 GKKQSGKREM VDLRTLLINC AQAIAADDRR SANDLLKQIR LHSSPFGDGN RRLAHCFADG 420 LEARLAGTGS QIYKGLVSKK TSAADLLKAY RLYLAACPFR KVSNFVSNKT IKITAENSTR 480 LHVIDFGILY GFQWPTFIHR LSCRPGGPPK LRMTGIEFPQ PGFRPAERVE ETGHRLAAYA 540 KEFKVPFEYN AIAKKWETIQ LEELKIDRDE VVVVNCLYRS KNLLDETVAV DSPRNIVLDL 600 VRKINPEIFI HGITNGAYNA PFYVTRFREA LFHFSAMFDM LETIVPREEL ERLVIEKEIF 660 GREALNVIAC EGWERVERPE TYKQWQVRCL RAGFVQLSFD QEIVKQATVK VRQNYHKDFL 720 FDEDSRWLFQ GWKGRIIYTL SAWKPAKRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-51 | 356 | 745 | 1 | 379 | Protein SCARECROW |
5b3h_D | 2e-51 | 356 | 745 | 1 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011019852.1 | 0.0 | PREDICTED: scarecrow-like protein 9 isoform X1 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A3N7F3E7 | 0.0 | A0A3N7F3E7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s08690.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |