PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010974.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 593aa MW: 67429.9 Da PI: 7.0824

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010974.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	283.3	7e-87	215	583	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalklfsevsPilk 92 l++lLl++Ae v +++ +a++lL+r + as++ +p+qR++ +f+eAL++r+ + +pp+e + k + a+ ++ Pi + CCG010974.1 215 LTHLLLAAAEKVGYRQFDRASRLLSRGERVASERSNPLQRVVYHFAEALRRRIDK----ATGRFPPTEMKGKPkcltlhGLGTHLAHLSVHQKVPINQ 308 579*************************************************9....33444555544333333333222222333388999 PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 + +lta qaI e v +++++H iD++i G+QW aL+qaLa+R++ +l+iT+vg +++eetg+ L+ fA+++++pf f+++ ++++++++ CCG010974.1 309 VMQLTAIQAIIENVGSARKIHLIDLEIRSGVQWTALMQALADRQRRLDHLKITAVGL---RGIQKIEETGKSLETFAKSMNLPFTFKPIQVSSMSEIK 403 ****************************************************9...5799****************************** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 e +++ +E+++V + + l ++l+++++le+ +++++k+l+P +++v e ea+hns++F++rf+eal +y a fd++e+ l +++ e +++ ++ CCG010974.1 404 EELFETAADETVVVVSNMILRTMLSRPACLEN----LMEVIKNLNPSLMIVGEVEANHNSPNFVNRFIEALFFYGAYFDCIETCL-EQNTEHTTIAEA 496 **************************99....********************************************8.666677777777 PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ i+n+va+eg++r++r+ + Wr+ ++++ + +v +se+ qa+l+ ++++ +d ++e++ ++l+ gW++ pL s+SaW+ CCG010974.1 497 IFSDGIENMVAMEGTDRIARNVKIDVWRAFFSRFRMVEVGFSETSLYQASLIPKQFPyGDSCTLEKNGKCLIVGWEGTPLHSLSAWK 583 7****************************************************9**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.188	189	562	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-84	215	583	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MANALFSFVP FDFNGIQSGY SHNEDSEKEE LVIKGKQDRK FSMENLGQVY PICSEYGAYQ 60 DNTENKELNF FRDQHQQQPQ QQQSPPKSNY LASDDLLGYC FPAPAQPTQE IRKLENIVEH 120 SKEMQYTPPL SSYLKLLHNY GSGIKKLNAN QPGSASNETC FGSRKKLSTE EIIRVAGSSF 180 IQFSDQRYDD FFMLMHPFGY ALSGLSEEEK RDVELTHLLL AAAEKVGYRQ FDRASRLLSR 240 GERVASERSN PLQRVVYHFA EALRRRIDKA TGRFPPTEMK GKPKCLTLHG LGTHLAHLSV 300 HQKVPINQVM QLTAIQAIIE NVGSARKIHL IDLEIRSGVQ WTALMQALAD RQRRLDHLKI 360 TAVGLRGIQK IEETGKSLET FAKSMNLPFT FKPIQVSSMS EIKEELFETA ADETVVVVSN 420 MILRTMLSRP ACLENLMEVI KNLNPSLMIV GEVEANHNSP NFVNRFIEAL FFYGAYFDCI 480 ETCLEQNTEH TTIAEAIFSD GIENMVAMEG TDRIARNVKI DVWRAFFSRF RMVEVGFSET 540 SLYQASLIPK QFPYGDSCTL EKNGKCLIVG WEGTPLHSLS AWKFSRERLR RSL

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MANALFSFVP FDFNGIQSGY SHNEDSEKEE LVIKGKQDRK FSMENLGQVY PICSEYGAYQ  60
DNTENKELNF FRDQHQQQPQ QQQSPPKSNY LASDDLLGYC FPAPAQPTQE IRKLENIVEH  120
SKEMQYTPPL SSYLKLLHNY GSGIKKLNAN QPGSASNETC FGSRKKLSTE EIIRVAGSSF  180
IQFSDQRYDD FFMLMHPFGY ALSGLSEEEK RDVELTHLLL AAAEKVGYRQ FDRASRLLSR  240
GERVASERSN PLQRVVYHFA EALRRRIDKA TGRFPPTEMK GKPKCLTLHG LGTHLAHLSV  300
HQKVPINQVM QLTAIQAIIE NVGSARKIHL IDLEIRSGVQ WTALMQALAD RQRRLDHLKI  360
TAVGLRGIQK IEETGKSLET FAKSMNLPFT FKPIQVSSMS EIKEELFETA ADETVVVVSN  420
MILRTMLSRP ACLENLMEVI KNLNPSLMIV GEVEANHNSP NFVNRFIEAL FFYGAYFDCI  480
ETCLEQNTEH TTIAEAIFSD GIENMVAMEG TDRIARNVKI DVWRAFFSRF RMVEVGFSET  540
SLYQASLIPK QFPYGDSCTL EKNGKCLIVG WEGTPLHSLS AWKFSRERLR RSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-35	244	583	32	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302768.3	0.0	DELLA protein RGL2
TrEMBL	A0A2K2BLG6	0.0	A0A2K2BLG6_POPTR; Uncharacterized protein
STRING	POPTR_0014s11510.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-60	RGA-like 2