PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010949.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 32885.6 Da PI: 6.7884 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll+++++ +G g+W+t ar+ g++Rt+k+c++rw++yl CCG010949.1 22 KGPWTVEEDSLLAHYITNHGEGHWNTAARCAGLKRTGKSCRLRWLNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.8e-15 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++ +G++ W++Ia+ ++ gRt++++k++w++ CCG010949.1 75 RGNITLQEQLLILQLHSHWGNR-WSKIAQQLP-GRTDNEIKNYWRT 118 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.169 | 17 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-29 | 19 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-12 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-21 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.81E-9 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 23.309 | 70 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-13 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 75 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 77 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.36E-6 | 95 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MDARLRKHGL ASTEDQDMGT RKGPWTVEED SLLAHYITNH GEGHWNTAAR CAGLKRTGKS 60 CRLRWLNYLR PNVRRGNITL QEQLLILQLH SHWGNRWSKI AQQLPGRTDN EIKNYWRTRV 120 QKQAKQLKCD VNSKQFRDTM RYAWIPRLIE RIHAESESPV DQPIISTPTY HSSQIDIPAA 180 ASESGSDLIG PNFMPDISGS CTYSDSLDAQ VSSGSDLTNS QNPPCSHYMQ NGACSYPEND 240 SLSWDWDQHR VDMQGMERGR YDLTGGGDSM ENLWSEENIW FLHHQLM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-22 | 22 | 124 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011040784.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | B9I9F3 | 0.0 | B9I9F3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s11230.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF875 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 4e-76 | myb domain protein 78 |