PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010842.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 238aa    MW: 27274.4 Da    PI: 4.6861
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010842.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-193284456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++f++eq++ Le++Fe++  +  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  CCG010842.1 32 KRRFSDEQIKSLETMFESETRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWK 84
                 679*************************************************9 PP
2HD-ZIP_I/II122.81.7e-3932122393
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  krr+s+eq+k+LE++Fe+e++Lep++K++la+eLglqprqva+WFqn+RAR+k+kqlE+dy++L+++y++l+++ e+L+ke+++L+ +l++
  CCG010842.1  32 KRRFSDEQIKSLETMFESETRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSMLRASYNSLASRFETLKKEKQALAIQLQK 122
                  9*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.17E-201088IPR009057Homeodomain-like
PROSITE profilePS5007118.2042686IPR001356Homeobox domain
SMARTSM003899.8E-172990IPR001356Homeobox domain
PfamPF000468.9E-173284IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.5E-203393IPR009057Homeodomain-like
CDDcd000865.78E-153587No hitNo description
PRINTSPR000316.2E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000316.2E-66682IPR000047Helix-turn-helix motif
PfamPF021831.9E-1686127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MFDGGEYSLS ATEPFSCLNS VITSRKKKNK IKRRFSDEQI KSLETMFESE TRLEPRKKMQ  60
LAKELGLQPR QVAIWFQNKR ARWKSKQLER DYSMLRASYN SLASRFETLK KEKQALAIQL  120
QKLNDLMKKP VEEGERCGQG AAVNSSEGES ENGDTTKGES ETRPRLSIEQ PEHGLGVLSD  180
EDSSIKADYF ELEEEPNLMS MVEPAEGSLT SQEDWGSLDS DGLFDQSSSD YQWWDFWA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2266151e-169CU226615.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038888.11e-175PREDICTED: homeobox-leucine zipper protein ATHB-7
SwissprotP468979e-76ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLB9I9241e-157B9I924_POPTR; Uncharacterized protein
STRINGPOPTR_0014s09860.11e-157(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-78homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]