PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010820.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 258aa MW: 28225.3 Da PI: 9.6657

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010820.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.5e-39	17	77	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+ CCG010820.1 17 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRST 77 6899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	16	75	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-33	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MASNSCGRPV VERKPRPQEQ LNCPRCNSTN TKFCYYNNYS LTQPRYFCKT CRRYWTEGGS 60 LRNVPVGGGS RKNKRSTSSS VAASSSKIPD LNPPSLPHFS SQNPKSTHEG QDLNLAFPAM 120 QDSQGISHYT EVAKTENRNN NQHNSSSSPY TSSPISAMEL LRSGFASRGL NTFIPTPMPD 180 SNTLYSSGGL PLQELKPTLS FAADGLRSRY GIQENSGRLL FPLGELKQLS STTSELDQNK 240 GQGASSGYWN GMFGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011038534.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X3
Refseq	XP_011038540.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X3
Refseq	XP_011038546.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X3
Refseq	XP_011038555.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X3
Swissprot	Q43385	2e-69	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A3Q9EDU3	1e-143	A0A3Q9EDU3_POPTO; DOF affecting germination 2
STRING	POPTR_0014s09640.1	1e-156	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-73	Dof family protein