PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010811.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 750aa    MW: 83597.9 Da    PI: 8.126
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010811.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.6e-23103203198
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+k+lt sd++++g +++ +k+a+e+     +++ + +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+
  CCG010811.1 103 FCKILTASDTSTHGGFSVLRKHATEClppldMSQATPTQELAARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGDNGELR 198
                  99****************************9555566679************************************************..3489999* PP

                  EEEE- CS
           B3  94 vkvfr 98 
                  v+++r
  CCG010811.1 199 VGLRR 203
                  **998 PP
2Auxin_resp93.43.6e-31229308183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+ t++ F v+Y+Pr+   ++++ ++k+++a+k+ +svGmRfkm+fe+ed +err++Gt+vgv d++p +W++S WrsLk
  CCG010811.1 229 ASHAVLTHTLFVVYYKPRT--NQYIIGLNKYLEAVKNGFSVGMRFKMRFEGEDTPERRFTGTIVGVGDISP-EWSGSMWRSLK 308
                  689999************6..99**********************************************99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-4094232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-4096218IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-19101203No hitNo description
PROSITE profilePS5086312.097103205IPR003340B3 DNA binding domain
PfamPF023621.5E-21103203IPR003340B3 DNA binding domain
SMARTSM010194.2E-23103205IPR003340B3 DNA binding domain
PfamPF065072.7E-29229308IPR010525Auxin response factor
PfamPF023096.2E-7540597IPR033389AUX/IAA domain
SuperFamilySSF542779.16E-9554627No hitNo description
PROSITE profilePS5174518.871561641IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
ELWKACAGPL VDVPKDGERV FYFPQGHMEQ LEASTNQELN QQIPRFNLPP KILCRVVNIQ  60
LLAEQDTDEV YAQITLHPEV DQTKPTSPDP CPPEPAKQTV HSFCKILTAS DTSTHGGFSV  120
LRKHATECLP PLDMSQATPT QELAARDLHG YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR  180
LVAGDSFVFL RGDNGELRVG LRRVACQQSS IPSSVISSQS MHLGVLATAS HAVLTHTLFV  240
VYYKPRTNQY IIGLNKYLEA VKNGFSVGMR FKMRFEGEDT PERRFTGTIV GVGDISPEWS  300
GSMWRSLKVH WDEPATIQRP ARVSPWDIEP FAAPASPNLT QQVVKSKRPR SMDIPTSEIT  360
TDPAASAFWY HGPTQSRELI QRGSVTEVQS SESHVWSMRQ KDIDSNLNNS GGCNSRGPEG  420
IWPPSSHMNV SLNFFPDPAG DNKCAKTQSI ISGFASSISR QSNGLINEQV EGGRKFENSV  480
GCRLFGIDLT SNSGIAAVPE KEPAYPIVDY IGTQGLVPAS SEAEKAQTMD FSMSSKEQKQ  540
VVPDTWAKES QSKQSSTTST RTRTKVKMQG VVVGRALDLT VLKGYKDLIN ELEKMFEIGE  600
LSMREKWAIV FTDNEGDTML VGDDPWPLGK KGGSVVLKFA QFFWELALVC LVGQESSAPK  660
FMFIFQVPVY IFRDGLENVL AKRLPQLHRV RSRSLISGEV DPHNQHVQTR LSTISFSREK  720
LPLPREYALQ LERDADRAKI KGHLASTNAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-169133122355Auxin response factor 1
4ldw_A1e-169133122355Auxin response factor 1
4ldw_B1e-169133122355Auxin response factor 1
4ldx_A1e-169133122355Auxin response factor 1
4ldx_B1e-169133122355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1646980.0KT164698.1 Populus tomentosa clone Potom.002G07206 auxin response factor 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038384.10.0PREDICTED: auxin response factor 18 isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A3N7G1X20.0A0A3N7G1X2_POPTR; Auxin response factor
TrEMBLA0A3N7GVY30.0A0A3N7GVY3_POPTR; Auxin response factor
STRINGPOPTR_0014s09560.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9