PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010732.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 187aa MW: 21228.2 Da PI: 9.5501

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010732.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.1	7.4e-33	108	166	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ CCG010732.1 108 LDDGYRWRKYGQKAVKNSKYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 166 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.0E-33	94	166	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-28	101	167	IPR003657	WRKY domain
PROSITE profile	PS50811	28.908	103	168	IPR003657	WRKY domain
SMART	SM00774	2.9E-38	108	167	IPR003657	WRKY domain
Pfam	PF03106	4.0E-26	109	166	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MEGQEAPPPP PLPQFPSQNP PYLFSPSLLL SSSLHPSIIE PQSLPDIDWV GLLSGQSGLG 60 ENRSIMDSAS MVAENGAEEE KDKKKGGRMK KTTRPRFAFQ TRSADDVLDD GYRWRKYGQK 120 AVKNSKYPRS YYRCTHHTCN VKKQVQRLSK DTSIVVTTYE GIHNHPCEKM METLTPLLKQ 180 MQFLARF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-24	98	165	7	74	Probable WRKY transcription factor 4
2lex_A	1e-24	98	165	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00317	DAP	Transfer from AT2G46130	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ377439	1e-176	GQ377439.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 19 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011037139.1	1e-140	PREDICTED: probable WRKY transcription factor 43
Swissprot	Q8GY11	5e-55	WRK43_ARATH; Probable WRKY transcription factor 43
TrEMBL	B9I8Q5	1e-117	B9I8Q5_POPTR; Uncharacterized protein
STRING	XP_002511926.1	7e-93	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	3e-56	WRKY DNA-binding protein 43

Publications ? help Back to Top
Geilen K,Heilmann M,Hillmer S,Böhmer M WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep, 2017. 7(1): p. 14235 [PMID:29079824]