PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010631.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 332aa MW: 35511.4 Da PI: 10.6288 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 120.6 | 1.8e-37 | 65 | 168 | 2 | 106 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaaksk 98 ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai ++tgt++ +a ++ + + + +s++a++++++ k CCG010631.1 65 PPKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIVAATGTGTVPAIAMsV--NGTLKIPTTTSSSAEPDEPNAK 160 6899************************************************************9888855531..2222222222223333333333 PP TCP 99 ksqksaas 106 k++k++a+ CCG010631.1 161 KKRKRPAN 168 33333322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.0E-31 | 70 | 164 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.769 | 71 | 125 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MTTADLRINS GELRNFRGGP TSKKNYNDMS AAPKEEPCTE DRSPTPPLAV VPFAAIPMPL 60 NTVTPPKRAS TKDRHTKVEG RGRRIRMPAT CAARIFQLTR ELGHKSDGET IRWLLEHAEP 120 AIVAATGTGT VPAIAMSVNG TLKIPTTTSS SAEPDEPNAK KKRKRPANSE YVDVNDSVSV 180 SASLAPITTR QPPQPQAQPP VTAVPQGLVP MWAIPSNTVV PGAFFMVPSM PGPSNQPQIF 240 TFPAAASPLI NISPRPISSF VSSMQSNIAV ALPVSGSKPG KGISMTAPSS SSAHTTRTTS 300 TTTNSTPQML RDFSLEIYDK QELQFMSRSS KQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035583.1 | 0.0 | PREDICTED: transcription factor TCP9-like | ||||
Swissprot | O64647 | 3e-97 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A3N7FY68 | 0.0 | A0A3N7FY68_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s07450.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 5e-79 | TCP family protein |