PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010621.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 458aa    MW: 51173.5 Da    PI: 5.8886
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010621.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like759.9e-24206259155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k++l+Wt+eLH+rF++a++ L G++ A Pk+il++m+v+gL  e+v SHLQkYRl
  CCG010621.1 206 KQKLVWTNELHNRFLQAIRIL-GIDGAHPKKILQHMNVPGLKKENVSSHLQKYRL 259
                  79*******************.********************************8 PP
2Response_reg59.22.2e-20251301106
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   +l+v+ +p+ ++++ ++l+  gy ev++a+ +++al++l+ek+  ++lil+   +p+md +e+l++  + + +lpi+v++a ++e+ +l +l  Ga 
   CCG010621.1  25 ILVVESDPTCLRIVSKMLQAFGY-EVTTATRATDALRILREKEdeINLILTETHLPDMDQYEILETVGKLS-SLPIVVFSADNNESAMLGCLYKGAA 119
                   89*********************.***************888778**********************8888.9************************ PP

                   EEEESS--HHH CS
  Response_reg  96 dflsKpfdpee 106
                    +l+Kp+ +++
   CCG010621.1 120 LYLMKPVIKND 130
                   ******87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.0E-2722146No hitNo description
SMARTSM004486.0E-1623135IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.42E-2423140IPR011006CheY-like superfamily
PROSITE profilePS5011031.79824139IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-1525132IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.42E-1826126No hitNo description
PROSITE profilePS512949.763203262IPR017930Myb domain
SuperFamilySSF466893.23E-18204263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-25204263IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-21206259IPR006447Myb domain, plants
PfamPF002493.4E-6209258IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSSEQVLSVE VTENNAGSFP IGVRILVVES DPTCLRIVSK MLQAFGYEVT TATRATDALR  60
ILREKEDEIN LILTETHLPD MDQYEILETV GKLSSLPIVV FSADNNESAM LGCLYKGAAL  120
YLMKPVIKND VKNLWQLTFR TKIKKAVSGE GSNSFHGGSS EENASSLTGG NPSSTMGMTD  180
QKGKRKELEE TDKDDKDNKN LTVPKKQKLV WTNELHNRFL QAIRILGIDG AHPKKILQHM  240
NVPGLKKENV SSHLQKYRLY LKREQDAMQK TMIRDCHPSS TFNLQGGFSQ YTNSQFFMTA  300
SQSEYRNNFQ NNLSSPMSAH SLGSVHSPTH VNSNYNGILI PNYGQVASQS KQLYTSYPNS  360
NHTEIMTVTD GNFSSFGQKG NHSVEEHLNQ GTALSNIGTH GPTFLGNSQQ QVQFPLPQPQ  420
PLPEKEDESD ILDIATVEEL ELLLMEKEFL EDPNNDLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-16206262157Transcription factor LUX
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035453.10.0PREDICTED: two-component response regulator ARR14-like
TrEMBLA0A3N7FY220.0A0A3N7FY22_POPTR; Uncharacterized protein
STRINGPOPTR_0014s07320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145541114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-54response regulator 2