PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG010611.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 628aa MW: 70357.6 Da PI: 4.4193 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.5 | 1.4e-28 | 17 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 +Gf+F+P+deel+ +yL +k++g+ ++ ++ v+++++ePwdLp k +k ++ wyf ++rd + gk ++r+tk+gyWk t ++k+++++ CCG010611.1 17 EQGFKFDPSDEELIRKYLVPKTRGDIMRG-LPMAVVNLCEHEPWDLPgKsIIKLaGQVTWYFICPRDLR---GKVHRRKTKAGYWKPTSQQKSITAEg 110 68***********************9988.569**************644333325559******9985...7789999*****************97 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+ +tL fy +k ++t W++ e+ l CCG010611.1 111 TKKEIGVVRTLRFY----EKQVRTGWMIYEFDL 139 7778**********....45679*******986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-31 | 11 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.188 | 16 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-19 | 18 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 628 aa Download sequence Send to blast |
MDDYFSSALP LLLLLMEQGF KFDPSDEELI RKYLVPKTRG DIMRGLPMAV VNLCEHEPWD 60 LPGKSIIKLA GQVTWYFICP RDLRGKVHRR KTKAGYWKPT SQQKSITAEG TKKEIGVVRT 120 LRFYEKQVRT GWMIYEFDLI AKSSQFKKGQ FVLCKLEFDS KGEKSKKGEQ SHHIAPVFHS 180 EVEPSQSMDS DSENINPSEM AMRYSPCDES ELSHHAGSHF GNQNPSELMN KSARQLSELS 240 HHMAPEFRNH NSNNLMPNLV YDGSGSSHST VFNCEDQYWN QPTVDSAYNG SESPYMAFDS 300 ENQNPNELPT VDNPTSNVNK NHGMAFEGCF EQENSPNPAL VQLPACMEES HFFRGFGTLE 360 NQEPFFPPCS FINQSTYDKS ESSSLMDFDF ENQNLVKEFD ISAFGEGVWS NTTATPPDFG 420 NQNPCKKTDT STFEEGYSSY FNSSSDNNLA DVALPEVRSG IQAGIEGCFE QENSPNPALV 480 QLPACMEESH FFRGFGTLEN QEPFFPPRSF INQSTYDKSE SSSLMNFGFG NQNPVKEFEI 540 SAFGEGVWSN TTATPPDFGN QNPCKKTDTS TIEEGYSSYF NSSSSDNDLA DVALPEVSPG 600 LQAEIEGCFE QENSPNPALV QLPSVGFE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-19 | 10 | 156 | 11 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-19 | 10 | 156 | 11 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-19 | 10 | 156 | 11 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-19 | 10 | 156 | 11 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
3swm_B | 2e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
3swm_C | 2e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
3swm_D | 2e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
3swp_A | 2e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
3swp_B | 2e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
3swp_C | 2e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
3swp_D | 2e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
4dul_A | 3e-19 | 10 | 156 | 11 | 162 | NAC domain-containing protein 19 |
4dul_B | 3e-19 | 10 | 156 | 11 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC182673 | 8e-33 | AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440233.1 | 0.0 | NAC domain-containing protein 45-like isoform X2 | ||||
Refseq | XP_024440234.1 | 0.0 | NAC domain-containing protein 45-like isoform X3 | ||||
TrEMBL | A0A3N7G1M1 | 0.0 | A0A3N7G1M1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s07220.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19008 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17980.1 | 4e-25 | NAC domain containing protein 71 |