PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010544.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 114aa    MW: 13061.4 Da    PI: 10.2987
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010544.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.4e-14487184
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkl 84
                 f k lt+ d  k  rl++p k++++    g      ++  ++de g++W++++++ +k++ + v+++ W++Fv++++L++gD ++F+ 
  CCG010544.1  4 FSKSLTKTDIEK--RLSFPTKCLRSLpcfGR--GHAVDFHVMDECGQVWTFRCTIrKKNDPKPVISRDWSKFVSSKHLDVGDKITFSK 87
                 556665555544..59*******999*9743..356899**************884556666************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-17390IPR015300DNA-binding pseudobarrel domain
CDDcd100174.52E-17385No hitNo description
SuperFamilySSF1019363.73E-15391IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-44102IPR003340B3 DNA binding domain
PfamPF023629.1E-12688IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MAIFSKSLTK TDIEKRLSFP TKCLRSLPCF GRGHAVDFHV MDECGQVWTF RCTIRKKNDP  60
KPVISRDWSK FVSSKHLDVG DKITFSKLEN KVGCAFYKIE VKKPVKLFGV NVGY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011302.11e-37PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
TrEMBLB9IBY34e-76B9IBY3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s06350.17e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-07related to ABI3/VP1 2