PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010504.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 656aa MW: 72497.5 Da PI: 6.5464

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010504.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	310	5.5e-95	304	655	5	374
GRAS 5 LlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 + ++Ae +++++ laq +Larl+++ + p g+p qR a+yf+ AL+ l+ + + s ++ n + ++ a+k fse+sPil+f+++t+Nq CCG010504.1 304 ICQAAELIENRNPVLAQGILARLNHQlSLPIGKPYQRTAFYFKDALQLLLHT------S-TNNSIDTACNLICKIGAYKSFSEISPILQFANFTCNQV 394 5799******************99788999***************9......3.33344444689*********************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl.edleleeLrvkp 198 +lea eg er+Hi+Dfdi++G+QW++L+q+La R++g psl+iT+++sp+ s++el t+e+L+ fA+e+++pfe ++l ++l +d + Lr+ + CCG010504.1 395 LLEASEGFERIHIVDFDIGYGGQWASLMQELALRTGGVPSLKITAFASPS--SHDELGFTRENLRIFASEINIPFELEILSLESLgSDSWPMPLRMPE 490 ********************************************88..9**********************966655155568889 PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +E++aVnl + ++ +++ +l+ L++vk+lsPkvvv ++ +d+++ +F +++ +a++ ys+l++sl+a + ++ +k+E +l+++ i++ CCG010504.1 491 KEVTAVNLPIG--SFSNDPSTLPL----ALRFVKQLSPKVVVSLDRGCDRSDLPFGHHVNHAIQSYSTLLESLDAV-NVNLDALQKIESFLVQPGIEK 581 *****95..55555666665....*****************************************665.3566999********** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +v + + + + Wr+ + ++GF+p+p+s+++++qa++l+++++++g++ve+++ slvl+W++++L+++SaWr CCG010504.1 582 IVLGRRRC----PDRTSPWRSLFLQSGFTPLPFSNFTESQAEYLVQRTPVRGFHVEKRQSSLVLCWQRKELIAASAWR 655 987776....88899************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.534	274	635	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-92	304	655	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MPLPFENFQG KGVLDFSSST TSSPDSLHQY HQKWHNNNSK ESCGFFLGST EPTSVLDTIS 60 RQSPPTSSST LSSSQGGGGG GGGASTDTTN GVAGADPSVG LDKLLQSGSR SEDTEHPSGF 120 GVVDQVFGFD VSSMSSASAN LVANNNIDPS SIHGINLLPG LFQQQQQQAA FDQDEKPLIL 180 NPVMISNQNQ HQFVQNPATL LPFSYSQLQE HHNNQHFLSP PPSKRLNSGP VGVNYVPKVF 240 DSRPPELFLP RQHQQHQQQQ QQPNHQFRML QQLQQRQGMI TNQKIASDEL ANQQHLQQAI 300 IGPICQAAEL IENRNPVLAQ GILARLNHQL SLPIGKPYQR TAFYFKDALQ LLLHTSTNNS 360 IDTACNLICK IGAYKSFSEI SPILQFANFT CNQVLLEASE GFERIHIVDF DIGYGGQWAS 420 LMQELALRTG GVPSLKITAF ASPSSHDELG FTRENLRIFA SEINIPFELE ILSLESLGSD 480 SWPMPLRMPE KEVTAVNLPI GSFSNDPSTL PLALRFVKQL SPKVVVSLDR GCDRSDLPFG 540 HHVNHAIQSY STLLESLDAV NVNLDALQKI ESFLVQPGIE KIVLGRRRCP DRTSPWRSLF 600 LQSGFTPLPF SNFTESQAEY LVQRTPVRGF HVEKRQSSLV LCWQRKELIA ASAWRC

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MPLPFENFQG KGVLDFSSST TSSPDSLHQY HQKWHNNNSK ESCGFFLGST EPTSVLDTIS  60
RQSPPTSSST LSSSQGGGGG GGGASTDTTN GVAGADPSVG LDKLLQSGSR SEDTEHPSGF  120
GVVDQVFGFD VSSMSSASAN LVANNNIDPS SIHGINLLPG LFQQQQQQAA FDQDEKPLIL  180
NPVMISNQNQ HQFVQNPATL LPFSYSQLQE HHNNQHFLSP PPSKRLNSGP VGVNYVPKVF  240
DSRPPELFLP RQHQQHQQQQ QQPNHQFRML QQLQQRQGMI TNQKIASDEL ANQQHLQQAI  300
IGPICQAAEL IENRNPVLAQ GILARLNHQL SLPIGKPYQR TAFYFKDALQ LLLHTSTNNS  360
IDTACNLICK IGAYKSFSEI SPILQFANFT CNQVLLEASE GFERIHIVDF DIGYGGQWAS  420
LMQELALRTG GVPSLKITAF ASPSSHDELG FTRENLRIFA SEINIPFELE ILSLESLGSD  480
SWPMPLRMPE KEVTAVNLPI GSFSNDPSTL PLALRFVKQL SPKVVVSLDR GCDRSDLPFG  540
HHVNHAIQSY STLLESLDAV NVNLDALQKI ESFLVQPGIE KIVLGRRRCP DRTSPWRSLF  600
LQSGFTPLPF SNFTESQAEY LVQRTPVRGF HVEKRQSSLV LCWQRKELIA ASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-30	315	655	18	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC211804	0.0	AC211804.1 Populus trichocarpa clone POP017-B20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024441223.1	0.0	scarecrow-like protein 6
Refseq	XP_024441224.1	0.0	scarecrow-like protein 6
Swissprot	O81316	1e-144	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2K1XR73	0.0	A0A2K1XR73_POPTR; Uncharacterized protein
STRING	POPTR_0014s05940.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3183	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-139	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]