PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010501.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 698aa    MW: 77041.4 Da    PI: 5.6412
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010501.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.81.3e-943446975374
         GRAS   5 LlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                  + ++Ae +++++  laq +Larl+++ + p g+p qR a+yf+ AL+  l++      ++ +p +++  n + ++ a+k fse+sPil+f+++t+Nq 
  CCG010501.1 344 ICQAAELIENRNPVLAQGILARLNHQlSLPIGKPYQRTAFYFKDALQLLLHS------SSNNPIDSA-CNLIFKIGAYKSFSEISPILQFANFTCNQV 434
                  5799********************99788999*******************9......555555554.68**************************** PP

         GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL..rvk 197
                  +lea+eg er+Hi+Dfdi++G+QW++L+q+La R++g+psl+iT+++sp+s ++ el  t+e+L+ fA+e+++pfe ++l  ++l + + + +  r++
  CCG010501.1 435 LLEAFEGFERIHIVDFDIGYGGQWASLMQELALRTGGAPSLKITAFSSPSSYDELELGFTQENLRIFASEINMPFELEILSLESLGSGS-WPMppRTS 531
                  *******************************************************************************9666666553.33335888 PP

         GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  ++E++aVnl +   ++ +++ +l+      L++vk+lsPkvvv  ++ +d+++ ++++++ +a++ ys+l++sl+a    + ++ +k+Er+l+++ i+
  CCG010501.1 532 EKEVTAVNLPIG--SFSNDPSTLPL----ALRFVKQLSPKVVVSLDRGCDRSDLPLAHHINHAIQSYSSLLESLDAV-NVNLDTIQKIERFLVQPGIE 622
                  8*********95..55555666665....*********************************************665.3566999************* PP

         GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++v  +++    r  +   Wr+ + ++GF+p+++s+++++qa++l+++++++g++ve ++ slvl+W+++ L+s+SaW+
  CCG010501.1 623 KIVLGRHR----RPDRTPPWRNLFLQSGFTPLTFSNFTESQAEYLVHRTPVRGFHVETRQSSLVLCWQRKDLISASAWT 697
                  ***98777....599999************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.523314677IPR005202Transcription factor GRAS
PfamPF035144.5E-92344697IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MPLPSEDFQG KGVLDFSSST TSSPDSLYQY HHKWQNNNSK ESCGFFVGGA EPTSVLDTII  60
RRSPPTSSST LSSSQGGGGG GGGASTDTTN DVAAAGGSIP CVDEECGQQL GMEDWESVLP  120
GSPSQEQSIL RLIMGDIEDP PGGLNKLLQG GSRSLDMEHA SGFGVVDQVF GFDISNMSSA  180
SANFVANNNN IDPSSIHGIN LLPGLFQQQQ QQAAFDQDEK PQILNPGMIS NQNQHQFVQN  240
PATLLPFSYS QLQEHHNNQH FLSPPPSKRL NSGHVGVNYV PKVFDSRPPE LFLPRQHQQQ  300
QQNHQFQMLQ QQQQQRQGVI MNQKIASDEL ANQQHLQQAI IGPICQAAEL IENRNPVLAQ  360
GILARLNHQL SLPIGKPYQR TAFYFKDALQ LLLHSSSNNP IDSACNLIFK IGAYKSFSEI  420
SPILQFANFT CNQVLLEAFE GFERIHIVDF DIGYGGQWAS LMQELALRTG GAPSLKITAF  480
SSPSSYDELE LGFTQENLRI FASEINMPFE LEILSLESLG SGSWPMPPRT SEKEVTAVNL  540
PIGSFSNDPS TLPLALRFVK QLSPKVVVSL DRGCDRSDLP LAHHINHAIQ SYSSLLESLD  600
AVNVNLDTIQ KIERFLVQPG IEKIVLGRHR RPDRTPPWRN LFLQSGFTPL TFSNFTESQA  660
EYLVHRTPVR GFHVETRQSS LVLCWQRKDL ISASAWTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-3135569618374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2118040.0AC211804.1 Populus trichocarpa clone POP017-B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033489.10.0PREDICTED: scarecrow-like protein 22 isoform X1
RefseqXP_011033496.10.0PREDICTED: scarecrow-like protein 22 isoform X1
SwissprotO813161e-148SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2K1XR630.0A0A2K1XR63_POPTR; Uncharacterized protein
STRINGPOPTR_0014s05910.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-142GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]