PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010481.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 409aa MW: 45360.2 Da PI: 8.4336 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.1 | 3.8e-41 | 175 | 252 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ CCG010481.1 175 RCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVIVLGLEQRFCQQCSRFHVVSEFDDAKRSCRRRLAGHNERRRKSSQ 252 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.1E-35 | 169 | 237 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.376 | 173 | 250 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.31E-38 | 174 | 254 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.6E-32 | 176 | 249 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MAGTKVKRMI MQIFLGIYGS LILQDLAWLI AVVTLLLLPT HSSPPPPPPP PPATSVVESG 60 SSCTNPEGTS AHGFLFPNQN SWLYHHSNNN SYQQLSLYAG DGSNLPPDPH LMCLKLGKRH 120 YFENSTSNNN HNNHPVSDRH EIGGFSIGKR GKPYYSVGVG AHDGPSSSTS VNVPRCQVEG 180 CHVALLNAKD YHRRHKVCEM HSKAPKVIVL GLEQRFCQQC SRFHVVSEFD DAKRSCRRRL 240 AGHNERRRKS SQDPVSRNSS QEKLMAGRFP YIASPTGCAL SLLSSKADSW VSPSDLPSRS 300 SAALRELIAE HRTAILARQL VLEKHLHHHA MEDLGESQPS SNFLITHQQQ VLSEPRHWGR 360 LNDTSTHVTL DLMQAPSSAF GFLSPRGKNK EEEEECSELW STMEGAHVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-31 | 167 | 249 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042488.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 7 | ||||
TrEMBL | U5FPG5 | 0.0 | U5FPG5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s05690.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9613 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 9e-38 | squamosa promoter binding protein-like 10 |