PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010441.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 364aa    MW: 40320.6 Da    PI: 10.0145
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010441.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.14.1e-2245135186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                  +Wt +e+ aLi+a+r+++ +lrrg+lk+++W+ev++++     +    ++++qC++k+e+l+kry+ + +++++   s+ ss++++f++++
  CCG010441.1  45 CWTPDETVALIDAYRDKWYTLRRGNLKANHWQEVADAVarrcPAASPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFSSSWVHFKRMD 135
                  8**********************************99966556667799*************************9789************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2244136No hitNo description
PROSITE profilePS500906.22646106IPR017877Myb-like domain
SMARTSM005956.8E-1353142IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSTPPNTGSP SPPQDLTPLQ ITALQALPAP PTQPSTNPRR LPPPCWTPDE TVALIDAYRD  60
KWYTLRRGNL KANHWQEVAD AVARRCPAAS PPKTAVQCRH KMEKLRKRYR TEIQRARSMP  120
VSRFSSSWVH FKRMDGMEKG PQAKADYNSE SEGDDNDDDN EDDGDIHGSY LENYRTTGNV  180
MNTRSIQKLY RNGIGNPGSG SGNNGLSGGN SSLGSGNAGG FRIRIPTGVS IAQPGPKFYA  240
KAEQKYGGGP SIGVNASPNP NMKPNYGGIG SSSRVMRGGE EMGKKREREP MEELVAAIKV  300
LGDGFVRMEQ MKMEMAREME TMRMEMEMKR TEMILESQQR ILEAFAKALS EKKKKPKRMP  360
SPES
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2772200.0GU277220.1 Populus balsamifera isolate STL13 haplotype A unknown protein gene, partial sequence.
GenBankGU2772220.0GU277222.1 Populus balsamifera isolate WHR03 haplotype A unknown protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032549.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLB9MV520.0B9MV52_POPTR; Uncharacterized protein
STRINGPOPTR_0014s05010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-78Trihelix family protein