PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010396.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 299aa MW: 33279.2 Da PI: 8.2207 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.5e-18 | 132 | 186 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +e+ LAk+l+L rqV vWFqNrRa+ k CCG010396.1 132 RKKLRLSKEQSLVLEETFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTK 186 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.4 | 2.5e-40 | 132 | 221 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l CCG010396.1 132 RKKLRLSKEQSLVLEETFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-AL 221 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.5E-32 | 1 | 103 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 8.3E-19 | 110 | 186 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.44E-19 | 119 | 189 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.443 | 128 | 188 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-16 | 130 | 192 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.79E-15 | 132 | 189 | No hit | No description |
Pfam | PF00046 | 1.2E-15 | 132 | 186 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 163 | 186 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.5E-11 | 188 | 222 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 5.7E-27 | 188 | 231 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MGDKNDGLGL SLSLGYDATQ QNHQQQPSLK LNLMPVPSQN NHRKTSLTDL FHSSDRACGT 60 RFFQRGIDMN RVPAAVTDCD DETGVSSPNS TLSSLSGKRS EREQIGEETE AERASCSRDS 120 DDEDGAGGDA SRKKLRLSKE QSLVLEETFK EHNTLNPKEK LALAKQLNLR PRQVEVWFQN 180 RRARTKLKQT EVDCEYLKRC CENLTEENRR LQKEVQELRA LKLSPQLYMH MNPPTTLTMC 240 PSCERVAVSS ASSSSAAAAS SSALAPTASN RQPQRPVPIN PWATMPVHHR AFDTPASRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 136 | SRKKLRL |
2 | 180 | 188 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011031821.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT3-like | ||||
Swissprot | P46602 | 1e-104 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | U5FSF5 | 0.0 | U5FSF5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s04460.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1239 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 7e-87 | homeobox-leucine zipper protein 3 |
Publications ? help Back to Top | |||
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