PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010286.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 212aa MW: 23871.7 Da PI: 10.4986 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49 | 1.1e-15 | 112 | 202 | 1 | 98 |
EEEE-..-HHHHTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+k + +s+v+ rl lp +f++++ ++++ +tl de+ +++v++ + + vl++GWk+F+ a+gL +gD vvF+l++ ++++v ++ CCG010286.1 112 FIKSMFQSHVTGGFRLgGLPVDFCRRNF--PRRGDFITLIDEDAVEYRVTY--LAR--ENVLGGGWKGFAVAHGLLDGDAVVFQLIK--PTTCKVYII 201 89***********99989*********6..446668***************..333..468***********************997..555678877 PP - CS B3 98 r 98 r CCG010286.1 202 R 202 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-20 | 106 | 205 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-18 | 106 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.38E-23 | 110 | 202 | No hit | No description |
SMART | SM01019 | 2.0E-17 | 112 | 204 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-13 | 112 | 202 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.63 | 113 | 204 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MEENKKRMEA LNLPKLCQAL KIPNRTKSSP MKRSKPRVVE KQVVVVRRSN RVANKPAPFF 60 EEAVLDRVVK PRRISKVTDF SNLVFATDEA RAKAIEKAEK LQSDLGSDYP TFIKSMFQSH 120 VTGGFRLGGL PVDFCRRNFP RRGDFITLID EDAVEYRVTY LARENVLGGG WKGFAVAHGL 180 LDGDAVVFQL IKPTTCKVYI IRVNGSEQGN SL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146978 | 0.0 | EF146978.1 Populus trichocarpa clone WS01225_L06 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011030161.1 | 1e-156 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X1 | ||||
Refseq | XP_011030170.1 | 1e-156 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X1 | ||||
Swissprot | Q9FMZ4 | 1e-57 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | U5FTX0 | 1e-124 | U5FTX0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s03120.1 | 1e-125 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 4e-49 | B3 family protein |
Publications ? help Back to Top | |||
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