PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010182.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 22471.4 Da PI: 7.34 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.2 | 3.6e-30 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ Cvl+ ++ p++q +++ +++k+FG+s +++l++a+pe++r+ +++sl++eA+ r+ +Pv+Gavg++++++++l+q+++e CCG010182.2 2 SCNGCRVLRKGCSETCVLRSCLhwiptPEAQGNATLFLAKFFGRSDLISLISAVPESQRPVLFQSLLFEACGRTVNPVNGAVGLLWSGNWHLCQAAVE 99 6************************9999*******************************************************************99 PP DUF260 94 lallke 99 +l +e CCG010182.2 100 SVLSGE 105 887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.494 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-25 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCVLR SCLHWIPTPE AQGNATLFLA KFFGRSDLIS LISAVPESQR 60 PVLFQSLLFE ACGRTVNPVN GAVGLLWSGN WHLCQAAVES VLSGETLRPL PGILTGVLAQ 120 NCDESSDSFS AAAYAVHSMT WNQSKPFDKE NNNQVVSDHH VNLCLARGSG GRDKRGRDAV 180 SFYTGGESET TSFESSGADK KKLLNLFV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028812.1 | 1e-153 | PREDICTED: LOB domain-containing protein 39-like | ||||
Swissprot | Q9SZE8 | 6e-62 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | B9IBU3 | 1e-137 | B9IBU3_POPTR; LBD family protein | ||||
STRING | POPTR_0014s01770.1 | 1e-138 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 3e-64 | LOB domain-containing protein 39 |