PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010175.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 1596aa    MW: 176063 Da    PI: 6.1337
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010175.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.4e-0615731596226
                   -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                   +++ C+ f+++G+Ck G++C+F H+
  CCG010175.1 1573 GQRVCK-FYESGYCKKGASCSFWHP 1596
                   6799**.8899***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.104.4E-9115174IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579035.76E-8116166IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.582119185IPR019787Zinc finger, PHD-finger
SMARTSM002494.9E-7121167IPR001965Zinc finger, PHD-type
CDDcd155683.39E-19121166No hitNo description
PROSITE patternPS013590122182IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.102.5E-24351436IPR003121SWIB/MDM2 domain
SuperFamilySSF475926.98E-21352429IPR003121SWIB/MDM2 domain
PfamPF022012.9E-14370428IPR003121SWIB/MDM2 domain
SMARTSM001510.0024372433IPR019835SWIB domain
PROSITE profilePS5136025.808493626IPR004343Plus-3 domain
SMARTSM007193.0E-44493603IPR004343Plus-3 domain
SuperFamilySSF1590422.62E-31494623IPR004343Plus-3 domain
PfamPF031261.4E-21498601IPR004343Plus-3 domain
SuperFamilySSF552775.23E-15826885IPR003169GYF domain
PROSITE profilePS5082914.449833887IPR003169GYF domain
SMARTSM004448.8E-17834889IPR003169GYF domain
Gene3DG3DSA:3.30.1490.407.1E-16835886IPR003169GYF domain
PfamPF022137.2E-12836879IPR003169GYF domain
PROSITE profilePS5010314.28615711596IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-615711595IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-415751595IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1596 aa     Download sequence    Send to blast
MRQQQEDCRP SIPDRTEEDA PKLFDNSLPI SDPMSTDQCE TIPQMDGSQL LGAPVTAVTS  60
DVDLSKRESV HTVPVVEVTN DSKIAEIITG KRKRGRPPKI QGKVGPPAFS AQRKKKDEED  120
VCFICFDGGS LVLCDRRGCP KAYHPACIKR DEAFFRSKAK WNCGWHICSS CQKASHYMCY  180
TCTYSLCKGC TKDADYLCVR GNKGFCGTCM RTIMLIENIA TGNQETVQVD FDDTTSWEYL  240
FKVYWIYLKA KLSLTVDELI KAKNPWKGDE LPKTKNSWIR AGAMAHKQDQ QGEFWHGKDN  300
KGSFSNSYCG NVEAIHAKRR KMDRTKLHTE ENSHFMEKSC VDQVTHLPEG TLWATKGLLE  360
FVSHMKNGDM SVLSQFDVQS LLLEYVKRNN LRDPYQKSHI ICDSRLMKLF GKERVGHFEM  420
LKLLDYHFLV KEESPADDET AAMRISDAVG GQVEAVRNND SQLLSGSDRR RKTHKRTDER  480
GPQINSNPEE FAAIDVHNIS LLYLKRSLME TLMDDAGKFH EKVVGSFVRI RTSGGDQKED  540
SYRLVQVVGT NKVAESYKFG TRTTDIMLEI LNLDKKEVIS IDGISNQEFS EDECKRLSQS  600
IKYGLIKPFT VGEIQKRAMA IHDVKVCDHL EAHIIRLNHL RDRASEKGHR KEYPLLECME  660
KLEILKSPEE RQRRLLEIPY VHTDPNVNSS NESEEDAGVS LKKKQGDHAR TRNASAGRNG  720
AEFNSSDRGN NPQNSAFSTE QSRDICTTFH VDRDGTTLVH ERLSESMQSQ GGEQIGLNGQ  780
NTSKNRAAST GSMTGEWNSE AAVQCGSYPG VASRNIPPPL STGREQLVDI ETDNLWHYQD  840
PTGKTQGPFA MAQLRKWSAS GLFPHNLRVW KINEKPDDSI LLTNALVGRF HKEPALSHNR  900
SSLTQEATVA SDKDKMHEFG MNQSIDAVQL DNKNINNWKS VQNNASVNCN DDDELLGSNA  960
WDAHSSSWTT SMNVTIPNNG QAQLALQLLE LSKGCKASSD QSNMCNSLSL FPSSGKLGET  1020
PSLQVKEEHE DEKWIYDLSD VNENSLKTLE GKNNIGRSDD RQADSESYSN QSSGQNWRPP  1080
VKSSSGWDSK SIVSGTKSVE ISQKNEEMEL FDLPCPTPKQ QLEDLQGQAV ENNHTTSKLP  1140
VLDSGPCWST ASSLVVGGAH LAGVASEWGG YSPAPVKPVE EWDSNHVSTS SLKPTDGGSD  1200
HAATLTPDSG QMTHAPPTHP VIDAPNWQPI IHEPAEFCSL VDESVSDLLA EVEAMESLGG  1260
LPSPTSKLCS AGELTRDYDD DCFSPVEGFS PAPDPGKSDA FSSTADIQNP SQLTVVSEAL  1320
LLCHMPSRPT VIDKPLGVSL MPSQLTVANE SHQLSCTPSQ STITDEPLEK SQRPSQSTLT  1380
DEPLGLSRTD APNPQNSFSE HSSTSPEAEG NMKPKDVSAN QRVRGSETQP PASSTGNQGE  1440
SGSDIQPATP STVSELEAGS DVQQPSPSSK DASQGTVKGR GAQGNTNMVW GNGHGTIQQH  1500
AKTSAANSTG KSGSWGSQPR HGGDRFSGPR DHRNPFQSRE RDSGFGRDRS SWNKQPLCGD  1560
GNGASTYRPP PKGQRVCKFY ESGYCKKGAS CSFWHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A6e-131151881181Histone-lysine N-methyltransferase NSD3
4gnd_C6e-131151881181Histone-lysine N-methyltransferase NSD3
4gne_A6e-131151881181Histone-lysine N-methyltransferase NSD3
4gnf_A6e-131151881181Histone-lysine N-methyltransferase NSD3
4gng_A6e-131151881181Histone-lysine N-methyltransferase NSD3
4gng_D6e-131151881181Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028743.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
TrEMBLA0A2K2AFG80.0A0A2K2AFG8_POPTR; Uncharacterized protein
STRINGPOPTR_0007s13760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding