PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010172.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 331aa MW: 36756.4 Da PI: 7.7271 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.3 | 1e-18 | 247 | 281 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg kTp+WR gp+g+ktLCnaCG++y++ +l CCG010172.1 247 CSHCGIQKTPQWRAGPNGSKTLCNACGVRYKSGRL 281 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 8.9E-88 | 13 | 328 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.426 | 241 | 277 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.0E-17 | 241 | 295 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.71E-14 | 242 | 304 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.2E-15 | 245 | 279 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.96E-14 | 246 | 294 | No hit | No description |
Pfam | PF00320 | 1.6E-16 | 247 | 281 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 247 | 272 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MERLEGALKT SFRKEMAVKF SPQVLDDFWA VNVTNGVSSD EFSVDELLDF SNENGFIEDE 60 EKPCAVSVSH KQETLKEDKN NDRSLYFAVK EDFVSVPTSE LCVPTDDLAS LEWLSHFVED 120 SNSEYAAPFP AIVSQPEPEK ENFAEQEKFL TEPCFKTPVP AKARSKRTRT GVRVWPLGSP 180 TLTESSTSSS SSTSSSSPSS PWLIHTKPLL NAEPLWFEKP VVKRMKKKPS FQAAASGGGG 240 SHSSRRCSHC GIQKTPQWRA GPNGSKTLCN ACGVRYKSGR LLPEYRPACS PTFSKELHSN 300 HHRKVLEMRR KKEIMGQTEP GLVQPVVPSC G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 228 | VKRMKKKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028683.1 | 0.0 | PREDICTED: GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 8e-83 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | B9MXJ5 | 0.0 | B9MXJ5_POPTR; GATA transcription factor | ||||
STRING | POPTR_0005s11960.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 2e-76 | GATA transcription factor 5 |