PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010168.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26640.4 Da    PI: 10.0364
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010168.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+ien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+t+k++ey+s
  CCG010168.1  9 KKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTNKFHEYIS 59
                 68***********************************************86 PP
2K-box87.23.2e-2971169199
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  yqk+ g +l+++++e++q++l+kLk+ +++L++e+R+++GedL++Ls+ +L+ Le+++ ++l+ +R +K++++++q+e+ +kk ++l+e++ +L +++
  CCG010168.1  71 YQKALGIDLWSTQYEKMQEQLRKLKDINHKLKKEIRQRIGEDLNELSIDHLRVLEHNMTEALNGVRGRKYHVIKTQTETYKKKVRSLEERHGNLWMEY 168
                  78899999**************************************************************************************9987 PP

        K-box  99 e 99 
                  e
  CCG010168.1 169 E 169
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-40160IPR002100Transcription factor, MADS-box
CDDcd002653.37E-40280No hitNo description
SuperFamilySSF554551.31E-37295IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-27323IPR002100Transcription factor, MADS-box
PfamPF003195.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-1982164IPR002487Transcription factor, K-box
PROSITE profilePS5129714.7784174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRGKIEIKK IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSN TNKFHEYISP  60
STTTKKIYDQ YQKALGIDLW STQYEKMQEQ LRKLKDINHK LKKEIRQRIG EDLNELSIDH  120
LRVLEHNMTE ALNGVRGRKY HVIKTQTETY KKKVRSLEER HGNLWMEYEA KMEDPRFGLV  180
DSEGGYESAA ALVNGASNLY AFRLHQGHHH HHPNLHLAGG LGPHDLRLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-16159159MEF2C
5f28_B5e-16159159MEF2C
5f28_C5e-16159159MEF2C
5f28_D5e-16159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3596063e-79AY359606.1 Populus tomentosa sex female APETALA3 (AP3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028630.11e-171PREDICTED: floral homeotic protein DEFICIENS-like
SwissprotQ003J21e-125TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A2K2AFH71e-159A0A2K2AFH7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12000.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.15e-75MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]