PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010070.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 997aa MW: 109058 Da PI: 5.0037

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010070.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.3e-29	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ CCG010070.1 598 AEKTVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.995	581	669	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-26	601	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-20	887	971	No hit	No description
PROSITE profile	PS51745	20.444	887	970	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.6E-23	887	970	No hit	No description
SMART	SM00666	5.2E-21	887	970	IPR000270	PB1 domain
CDD	cd06407	3.73E-30	888	969	No hit	No description
Pfam	PF00564	5.7E-17	888	969	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 997 aa Download sequence Send to blast
MENSFSSKEK GMGYWASPRA QMDTVTTFGG APRNSFFEDP FNSFSELMNF DMYAGWCNNS 60 SAMDQMLAPY GTPSFPSTSY PSFDAGSFAE QNSASIQETI NAAGTSYNGG DKVMLQQTNS 120 HCGYPSDSID ADDLGAKHGN GVGQQNHFPN TTYYIMSQPV GPSLDERMLR ALSLLKVSYG 180 GGILAQVWVP IRSADQYILS TSEQPYLLDQ MLAGFREVSR TFTFSAEVKP GVPLGLPGRV 240 FISKVPEWTS NVRYYRKAEY LRAKHAVDHE VRGSFALPIF DPDEMSCCAV LELVTVKEKP 300 DFDSEMENVC DALEAVNLRS TPPPRLLPQC LSSNKRAALS EIADVLRAVC HAHRLPLALT 360 WMPCNYTEEA VDEIIKVRVR EANSRSSGKC VLCIEGTACY VNDREMQGFV HACAEHYIEE 420 GQGIAGKAVQ SNHPFFFPDV KTYDITEYPL VHHARKYGLN AAVAIRLRST YTGDDDYILE 480 LFLPVNIKES SDQQLLLNNL SGTMQRICKS LRTVSDTEFV GQECSEVGLP KEALPSFQPI 540 SILNGSSQTA LSEGNLNSAA NLPLNVCSSK NDKIGSNSSN AQTTSGFRRQ VEKKRSTAEK 600 TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL 660 DSVQGVEGGL KFDPTTGGFV AGGSVNQEFD HQNGFVFQAK NLSKGNSEPA NHDVVSVLPA 720 SCTDGNNSTV KVEEDECCIV SGGELKDCSV HVIDCSADSK SVAIDAGLCE QTSFGSGPWA 780 CLENDLPGSF AKAGNIGGMK NGGIILENSD SCIVPRSSLP FFAAEEMDTK MEGDDGNVER 840 NQPTCSSMTD SSNSSGSIMH GSISSSPSFE ERKHSKERTS FGDGDLKITV KARYREDIIR 900 FKFDPSAAGC LQLYEEVSKR FKLQTGTFQL KYLDDEEEWV LLVSDSDLLE CLEIMEYVGT 960 RSVKFLVRDT PFAMGSSDSS NCFLTGSSEH MGDTGNL

Sequence ? help Back to Top

Protein Sequence Length: 997 aa Download sequence Send to blast

MENSFSSKEK GMGYWASPRA QMDTVTTFGG APRNSFFEDP FNSFSELMNF DMYAGWCNNS  60
SAMDQMLAPY GTPSFPSTSY PSFDAGSFAE QNSASIQETI NAAGTSYNGG DKVMLQQTNS  120
HCGYPSDSID ADDLGAKHGN GVGQQNHFPN TTYYIMSQPV GPSLDERMLR ALSLLKVSYG  180
GGILAQVWVP IRSADQYILS TSEQPYLLDQ MLAGFREVSR TFTFSAEVKP GVPLGLPGRV  240
FISKVPEWTS NVRYYRKAEY LRAKHAVDHE VRGSFALPIF DPDEMSCCAV LELVTVKEKP  300
DFDSEMENVC DALEAVNLRS TPPPRLLPQC LSSNKRAALS EIADVLRAVC HAHRLPLALT  360
WMPCNYTEEA VDEIIKVRVR EANSRSSGKC VLCIEGTACY VNDREMQGFV HACAEHYIEE  420
GQGIAGKAVQ SNHPFFFPDV KTYDITEYPL VHHARKYGLN AAVAIRLRST YTGDDDYILE  480
LFLPVNIKES SDQQLLLNNL SGTMQRICKS LRTVSDTEFV GQECSEVGLP KEALPSFQPI  540
SILNGSSQTA LSEGNLNSAA NLPLNVCSSK NDKIGSNSSN AQTTSGFRRQ VEKKRSTAEK  600
TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL  660
DSVQGVEGGL KFDPTTGGFV AGGSVNQEFD HQNGFVFQAK NLSKGNSEPA NHDVVSVLPA  720
SCTDGNNSTV KVEEDECCIV SGGELKDCSV HVIDCSADSK SVAIDAGLCE QTSFGSGPWA  780
CLENDLPGSF AKAGNIGGMK NGGIILENSD SCIVPRSSLP FFAAEEMDTK MEGDDGNVER  840
NQPTCSSMTD SSNSSGSIMH GSISSSPSFE ERKHSKERTS FGDGDLKITV KARYREDIIR  900
FKFDPSAAGC LQLYEEVSKR FKLQTGTFQL KYLDDEEEWV LLVSDSDLLE CLEIMEYVGT  960
RSVKFLVRDT PFAMGSSDSS NCFLTGSSEH MGDTGNL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU231638	1e-146	CU231638.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047733.1	0.0	PREDICTED: protein NLP8-like
Refseq	XP_011047734.1	0.0	PREDICTED: protein NLP8-like
Refseq	XP_011047735.1	0.0	PREDICTED: protein NLP8-like
TrEMBL	A0A2K1ZTV0	0.0	A0A2K1ZTV0_POPTR; Uncharacterized protein
STRING	POPTR_0007s01530.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein