PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010050.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HD-ZIP

Protein Properties

Length: 179aa MW: 20256.8 Da PI: 8.8446

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010050.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.9e-18	21	74	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ ++ql+ Le+ F+ ++++ae++ eLA++lgLt rqV +W+qNrRa+ k+ CCG010050.1 21 KKRLARDQLRLLEASFNAIQTLKAEHKIELASQLGLTPRQVEIWYQNRRARNKN 74 456899*********************************************995 PP
2	HD-ZIP_I/II	97.8	1e-31	20	111	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++q++lLE sF++ ++L+ e+K ela++Lgl+prqv++W+qnrRAR k+ +E+dy+ ++ ++ ++++en+rLek+v++L+ el++ CCG010050.1 20 RKKRLARDQLRLLEASFNAIQTLKAEHKIELASQLGLTPRQVEIWYQNRRARNKNNAIEHDYKNVQLELGNVMTENTRLEKQVSTLKYELSK 111 89*************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.4E-17	7	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.293	15	75	IPR001356	Homeobox domain
SMART	SM00389	5.0E-14	17	79	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.36E-16	18	82	IPR009057	Homeodomain-like
CDD	cd00086	4.89E-13	20	75	No hit	No description
Pfam	PF00046	2.0E-15	20	73	IPR001356	Homeobox domain
PRINTS	PR00031	2.1E-6	46	55	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	50	73	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.1E-6	55	71	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MNSHLHHQSQ SHGNHAQKPR KKRLARDQLR LLEASFNAIQ TLKAEHKIEL ASQLGLTPRQ 60 VEIWYQNRRA RNKNNAIEHD YKNVQLELGN VMTENTRLEK QVSTLKYELS KVQQMIPFGS 120 TTSASALASV SGCSDEQANS TSPGNMICNW RDAGKDEIFP VEELYTCLTG SGTQLWHLS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047707.1	1e-133	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	B9HGS4	1e-121	B9HGS4_POPTR; Uncharacterized protein
STRING	POPTR_0007s01370.1	1e-122	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16535	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	7e-21	homeobox protein 52