PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010048.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 298aa MW: 33567 Da PI: 8.8158

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010048.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.6	7.4e-34	59	199	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tk..sgyWk 84 lp+G++F+Ptd el+ e+L+ kv++++++++ +i+++d i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ t+ + +W+ CCG010048.1 59 LPAGVKFDPTDLELL-EHLEGKVKSDTCKVHPlideFIPTIDgengICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKvhtdTEggETRWH 154 799**********.99*****5553333443444434445******.555555677**************745553344667 PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tgk+++v++ g++ g kk+Lv+y g+++k+ekt+Wvmh+y+l CCG010048.1 155 KTGKTRPVVV-AGKVRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 199 ********.999*******6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-38	52	218	IPR003441	NAC domain
PROSITE profile	PS51005	33.37	59	218	IPR003441	NAC domain
Pfam	PF02365	2.2E-15	60	199	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MTWCNDCNDV QTIERSSPPP CNASVFAQRH KECLIRSCPS CGHQMKCQDQ ARIHDLPGLP 60 AGVKFDPTDL ELLEHLEGKV KSDTCKVHPL IDEFIPTIDG ENGICYTHPE KLPGVSKDGL 120 IRHFFHRPSK AYTTGTRKRR KVHTDTEGGE TRWHKTGKTR PVVVAGKVRG YKKILVLYTN 180 YGKQRKPEKT NWVMHQYHLG NNEEEKDGEL VVSKVFYQTQ PRQCGSLIKD SVPVPSKLKV 240 QSSGHEGSNL KNSTPLVDYY NPSFISFDQS GQNRSTNPNP PQQLLPHFAL QDGSSLIP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB970793	0.0	AB970793.1 Populus nigra PniNAC122 mRNA for NAC transcriptional factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047705.1	0.0	PREDICTED: NAC domain-containing protein 8-like
Swissprot	O49459	1e-128	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	B9MYC7	0.0	B9MYC7_POPTR; NAC family protein
STRING	POPTR_0017s04800.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-130	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]