PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010044.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 1791aa MW: 200784 Da PI: 5.2875

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010044.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.3	5.6e-18	25	81	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR +++qle+Le+ + + yps++ r+eL+ +lgL++rq ++WF+ rR k++k CCG010044.1 25 KSKRKMKSASQLEILEKTYSVDAYPSEAVRAELSVQLGLSDRQLQMWFCHRRLKDRK 81 67999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-17	14	81	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-15	21	81	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.584	22	82	IPR001356	Homeobox domain
SMART	SM00389	9.6E-16	24	86	IPR001356	Homeobox domain
Pfam	PF00046	2.0E-15	25	81	IPR001356	Homeobox domain
CDD	cd00086	9.12E-14	25	81	No hit	No description
SMART	SM00571	3.4E-23	556	615	IPR018501	DDT domain
PROSITE profile	PS50827	17.171	556	615	IPR018501	DDT domain
Pfam	PF02791	9.4E-18	557	612	IPR018501	DDT domain
Pfam	PF05066	7.6E-15	738	805	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.4E-8	953	993	IPR028942	WHIM1 domain
Pfam	PF15613	6.2E-14	1140	1212	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1791 aa Download sequence Send to blast
MEEAAGGGGV EVEAKKKTTG EGESKSKRKM KSASQLEILE KTYSVDAYPS EAVRAELSVQ 60 LGLSDRQLQM WFCHRRLKDR KAPSVKRPRK ESPSPAGMPG GGEMGVVAEV GSEHGSGSSP 120 FVLGVDPRQA VGRPTGVAVP RTSADVQAMK RYYEPQQSIV ELRAIAFVEA QLGEPLREDG 180 PILGMEFDPL PPDAFGAPIG SATTGQQKQS ARIFEANLYE LPDVKTIKST TRTLHEYQFL 240 PQQPTVRAEA YERAAPSCQY GSPADVHDVK TESISATLPF MHANEQVSSG YGLSNQVPSL 300 SLMPQESRQG HLLPSTTGEY ETVIQKCSFT NIGMDAQSDA HLVTALDNPY MSSDRRVTHD 360 EDALRMQRKR KSEEARIARE VEAHEKRIRK ELEKQDILRR KREEQMRKEM EKHDRERRKE 420 EERLLREKQR EAERYQREQK RELERREKFL QKESIRVEKM RQKEELRRER EAARQKAATE 480 RAIARRMAKE SMELIDDERL ELMEMAASSK GLPSIIPLDF ETLQNLDLFR DKLTEFPPKS 540 VLLKRPFLIQ PWNDSEENVG NLLMVWRFLI TFADVLGIWP FTLDEFVQAF HDYDPRLLSE 600 VHVALLKSII KDIEDVARTP ATGLGPNQNG AANPGGGHPQ IVEGAYAWGF DLRSWQRHLN 660 PLTWPEILRQ LGLSAGFGPQ LKKRNVDQAY LRDDNEGNDG EDVITNLRNG AAVENAVSIM 720 QERGFSDPRR SRHRLTPGTV KFAAFHVLSL EGSKGLTILE VADKIQKSGL RDLTTSKTPE 780 ASIAAALSRD SKLFERTAPS TYCIRPAYRK DPADTETILS AARERIRTFK SGIVDGEDAD 840 DAERDEDSES DVAEDHEIDD LGTGLNSKKV AHDSPETNEF NGKTVLGNGN ESGGLKTPQV 900 RLEKVRAGLT SLHSEGTNEL KGAGSSIDES VDVAEIHTIP DQDVDIDENN LGEPWVQGLV 960 EGEYSDLSVE ERLNALVALI GVATEGNSIR VALEMRLVQE RLEAANALKK QMWAEAQLDK 1020 RRMKEEFVMR TQYSSFTGNK MEPNQTISAT EGRQTPMVSV DDRSNGMPAN ASVQQELLSD 1080 QQSDMNYLNN MPFEGNMQMQ DLSAGPDNLP YQQAVHIAEK SRSQLKSVIG HRAEEMYVYR 1140 SLPLGQDRRH NRYWRFTTSA SRNDPGCGRI FVELHDGRWR LIDYEEGFDT LLSSLDVRGV 1200 RESHLHAMLQ KIEVPFKETI RMRMLRANTE GQSKDPIKAE AVEMAAGPKS GTGMDSPRSI 1260 VCVPDSDMSE TSTSFTIELG RNEIEKNHAL KRFQDFEKWM WKECFKSSVL CAMKYEKKRC 1320 TQLLGVCDYC HDTYFFEDNH CPSCHNTHAS QTGLNFSEHV AHCERKLKMD PDSALCSLSF 1380 PPRIRLLKSL LALIEASALN AMVSVLPEAL QPVWTNGYRK SWGMKLQSSS CVDDLLQILI 1440 LLEVGMKRDY LSSNYETSSE LLSSSDQSGC AAHDSFNAGA APVLPWLPQT TAAVALRVIE 1500 FDASISYMLH QKLESQKDRS AGNFIKLPSK YAVMKNTPDN ETTEIPHQAG LLQEDDWVDV 1560 GIGLAGLGRE QGIRGRGRRR PRGGRSQTRI IGSRSESSKR SASRSSDRLE KVLSWTGRPR 1620 GRGGCKSGRR SIRSRQKAVK KAAEIIPERK IPKETLYKQS TRHMGRHVRN GDETRFHTED 1680 AENASSSERS EYNDENENIP ASGDAYDDQV VDDYAGGFNG KSDDLLEGSD YNIDSNEEDD 1740 DDDAMNEDED ELGDLDVEEY INRDSDEDGI RDGGQNGAQD GTESSSSDFS D

Sequence ? help Back to Top

Protein Sequence Length: 1791 aa Download sequence Send to blast

MEEAAGGGGV EVEAKKKTTG EGESKSKRKM KSASQLEILE KTYSVDAYPS EAVRAELSVQ  60
LGLSDRQLQM WFCHRRLKDR KAPSVKRPRK ESPSPAGMPG GGEMGVVAEV GSEHGSGSSP  120
FVLGVDPRQA VGRPTGVAVP RTSADVQAMK RYYEPQQSIV ELRAIAFVEA QLGEPLREDG  180
PILGMEFDPL PPDAFGAPIG SATTGQQKQS ARIFEANLYE LPDVKTIKST TRTLHEYQFL  240
PQQPTVRAEA YERAAPSCQY GSPADVHDVK TESISATLPF MHANEQVSSG YGLSNQVPSL  300
SLMPQESRQG HLLPSTTGEY ETVIQKCSFT NIGMDAQSDA HLVTALDNPY MSSDRRVTHD  360
EDALRMQRKR KSEEARIARE VEAHEKRIRK ELEKQDILRR KREEQMRKEM EKHDRERRKE  420
EERLLREKQR EAERYQREQK RELERREKFL QKESIRVEKM RQKEELRRER EAARQKAATE  480
RAIARRMAKE SMELIDDERL ELMEMAASSK GLPSIIPLDF ETLQNLDLFR DKLTEFPPKS  540
VLLKRPFLIQ PWNDSEENVG NLLMVWRFLI TFADVLGIWP FTLDEFVQAF HDYDPRLLSE  600
VHVALLKSII KDIEDVARTP ATGLGPNQNG AANPGGGHPQ IVEGAYAWGF DLRSWQRHLN  660
PLTWPEILRQ LGLSAGFGPQ LKKRNVDQAY LRDDNEGNDG EDVITNLRNG AAVENAVSIM  720
QERGFSDPRR SRHRLTPGTV KFAAFHVLSL EGSKGLTILE VADKIQKSGL RDLTTSKTPE  780
ASIAAALSRD SKLFERTAPS TYCIRPAYRK DPADTETILS AARERIRTFK SGIVDGEDAD  840
DAERDEDSES DVAEDHEIDD LGTGLNSKKV AHDSPETNEF NGKTVLGNGN ESGGLKTPQV  900
RLEKVRAGLT SLHSEGTNEL KGAGSSIDES VDVAEIHTIP DQDVDIDENN LGEPWVQGLV  960
EGEYSDLSVE ERLNALVALI GVATEGNSIR VALEMRLVQE RLEAANALKK QMWAEAQLDK  1020
RRMKEEFVMR TQYSSFTGNK MEPNQTISAT EGRQTPMVSV DDRSNGMPAN ASVQQELLSD  1080
QQSDMNYLNN MPFEGNMQMQ DLSAGPDNLP YQQAVHIAEK SRSQLKSVIG HRAEEMYVYR  1140
SLPLGQDRRH NRYWRFTTSA SRNDPGCGRI FVELHDGRWR LIDYEEGFDT LLSSLDVRGV  1200
RESHLHAMLQ KIEVPFKETI RMRMLRANTE GQSKDPIKAE AVEMAAGPKS GTGMDSPRSI  1260
VCVPDSDMSE TSTSFTIELG RNEIEKNHAL KRFQDFEKWM WKECFKSSVL CAMKYEKKRC  1320
TQLLGVCDYC HDTYFFEDNH CPSCHNTHAS QTGLNFSEHV AHCERKLKMD PDSALCSLSF  1380
PPRIRLLKSL LALIEASALN AMVSVLPEAL QPVWTNGYRK SWGMKLQSSS CVDDLLQILI  1440
LLEVGMKRDY LSSNYETSSE LLSSSDQSGC AAHDSFNAGA APVLPWLPQT TAAVALRVIE  1500
FDASISYMLH QKLESQKDRS AGNFIKLPSK YAVMKNTPDN ETTEIPHQAG LLQEDDWVDV  1560
GIGLAGLGRE QGIRGRGRRR PRGGRSQTRI IGSRSESSKR SASRSSDRLE KVLSWTGRPR  1620
GRGGCKSGRR SIRSRQKAVK KAAEIIPERK IPKETLYKQS TRHMGRHVRN GDETRFHTED  1680
AENASSSERS EYNDENENIP ASGDAYDDQV VDDYAGGFNG KSDDLLEGSD YNIDSNEEDD  1740
DDDAMNEDED ELGDLDVEEY INRDSDEDGI RDGGQNGAQD GTESSSSDFS D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	366	371	QRKRKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209002	0.0	AC209002.1 Populus trichocarpa clone POP040-E22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047700.1	0.0	PREDICTED: uncharacterized protein LOC105141971 isoform X3
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2K1ZTZ3	0.0	A0A2K1ZTZ3_POPTR; Uncharacterized protein
STRING	POPTR_0007s01330.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator