PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010027.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 382aa    MW: 43248.5 Da    PI: 7.4994
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010027.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.6e-08123144426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C+ f r G C++G++C FaHg
  CCG010027.1 123 AVCPEFIR-GGCNRGENCEFAHG 144
                  78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.1E-5118148IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.887120146IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-5123144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5124146IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.427154178IPR000571Zinc finger, CCCH-type
SMARTSM003565.2154177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGTISAEQHK LYPSRQILSP KKLFRDLEIP PRTLLTRKTH QETLDVSPYE TNLQEFLPYN  60
DYNNEIDIDD ELDPYSSDHF RMYEFKVRRC TRSRSHDWTD CPFAHPGEKA RRRDLRRFHY  120
SGAVCPEFIR GGCNRGENCE FAHGVFECWL HPFRYRTEAC KDGRNCKRKV CFFAHSPRQL  180
RILPEGSSHS KTLGSSPCSS LNHGHCCCAV SHSMTSSPTS TLLGMSPLSP PLSPSLTPSL  240
SPVKHQSLSG FSPISRYSER LSKFRAGVVS YEDVFTELMS SLEATNFNEA AGVSSPMSLY  300
PNHKRNVNNT PRNIDVCFDG EDQPQFILSP STPTPSSSFF NRDCSSNKGL FINDIHKINE  360
HNNGGLACTP DPDLGWVNEL LM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047672.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A2K1ZU290.0A0A2K1ZU29_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.15e-72C3H family protein