PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009756.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 421aa MW: 46657.2 Da PI: 7.0077

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009756.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	4.9e-32	276	331	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+peLH++Fv+a++qLGG+++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ CCG009756.1 276 KHRRCWSPELHRQFVNALQQLGGAQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 331 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-29	273	334	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.648	273	333	IPR017930	Myb domain
SuperFamily	SSF46689	8.43E-18	274	334	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-26	276	331	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	278	329	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MGSVPPELSL DFVRPSSTTK TFTSAIKKFT FLPETITDFL KEVSMIGDAA VKGLKIDSFL 60 NDLEEEKRKI DAFKRELPLC MLLLNDAIQV VREELMQCGT SINQQPVLEE FIPLKKKIDD 120 HGDDRESDGL IKEKDSKDKK SWMSSVQLWI TDDHHPSTDY LFDAKQNFKL ESKTNKKANQ 180 YVNEDAFQAC KGRTAAGTFM PFKAYPGSLR KEDDSNREEL PVPALSLLTP GIKSIKEESN 240 STGSRSSCSR SVSTTAPNSE SNLRNGPQSQ QQSSRKHRRC WSPELHRQFV NALQQLGGAQ 300 VATPKQIREL MQVDGLTNDE VKSHLQKYRL HTRRVAPATA SAPANQSAIV LGGLWMAQDQ 360 YGDSSKANSS KSGSPQGPLQ LAVNTGGTST TGGDSMEDDE DAKSEGYSWK SHIHRSGKED 420 V

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MGSVPPELSL DFVRPSSTTK TFTSAIKKFT FLPETITDFL KEVSMIGDAA VKGLKIDSFL  60
NDLEEEKRKI DAFKRELPLC MLLLNDAIQV VREELMQCGT SINQQPVLEE FIPLKKKIDD  120
HGDDRESDGL IKEKDSKDKK SWMSSVQLWI TDDHHPSTDY LFDAKQNFKL ESKTNKKANQ  180
YVNEDAFQAC KGRTAAGTFM PFKAYPGSLR KEDDSNREEL PVPALSLLTP GIKSIKEESN  240
STGSRSSCSR SVSTTAPNSE SNLRNGPQSQ QQSSRKHRRC WSPELHRQFV NALQQLGGAQ  300
VATPKQIREL MQVDGLTNDE VKSHLQKYRL HTRRVAPATA SAPANQSAIV LGGLWMAQDQ  360
YGDSSKANSS KSGSPQGPLQ LAVNTGGTST TGGDSMEDDE DAKSEGYSWK SHIHRSGKED  420
V

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147597	0.0	EF147597.1 Populus trichocarpa clone WS0123_L02 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011001194.1	0.0	PREDICTED: two-component response regulator-like APRR2
Refseq	XP_011001195.1	0.0	PREDICTED: two-component response regulator-like APRR2
TrEMBL	B9N4V0	0.0	B9N4V0_POPTR; Uncharacterized protein
STRING	POPTR_0004s15220.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1208	34	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-55	G2-like family protein