PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009698.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SBP

Protein Properties

Length: 472aa MW: 51963.8 Da PI: 8.4302

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009698.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.6	2.8e-41	171	248	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dl++ak+yhrrh++Ce+hsk+p+v+v+g+e+rfCqqCsrfhelsefD++krsCrrrL++hn+rrr++q+ CCG009698.1 171 RCQVEGCNLDLKSAKDYHRRHRICEKHSKSPKVIVAGMERRFCQQCSRFHELSEFDDKKRSCRRRLSDHNARRRRPQP 248 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-35	165	233	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	33.018	169	246	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.16E-39	170	251	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-32	172	245	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MDWNSTASEG NWENIAGLSA KASDIPKQVP SAYHETERDG AIDKAITYSS GGGLSSSDLW 60 HCSSSKSSVS PSVDSSLKGG IKTYSTADGF PRVIIRKDLT RVESTENIPS LGASASSGEP 120 VIGLKLGKRM YFEDICTTST AKSSSSSIVS TSCTATTKRS RASYPSTQSP RCQVEGCNLD 180 LKSAKDYHRR HRICEKHSKS PKVIVAGMER RFCQQCSRFH ELSEFDDKKR SCRRRLSDHN 240 ARRRRPQPEA IRFNSARPSS SPSSFYGCHF NFKDGRQQMN VVLNRVPFLA GNSTWQSECG 300 FKVTHAGDFF IRPAKAGDIH RQLSYPCNEV PDAASTIPTD SDKILSFERS TPQVFSQGFE 360 GSALTSNIEV APDLRRALSL LSTNSWGSNE HGSTSLDQLM LANQTSMTQP MINAELQNCP 420 VASSENARME QASLESRVHS LDLHDNGNVQ LQEFQLLKAP YATGCFYSNQ FS

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MDWNSTASEG NWENIAGLSA KASDIPKQVP SAYHETERDG AIDKAITYSS GGGLSSSDLW  60
HCSSSKSSVS PSVDSSLKGG IKTYSTADGF PRVIIRKDLT RVESTENIPS LGASASSGEP  120
VIGLKLGKRM YFEDICTTST AKSSSSSIVS TSCTATTKRS RASYPSTQSP RCQVEGCNLD  180
LKSAKDYHRR HRICEKHSKS PKVIVAGMER RFCQQCSRFH ELSEFDDKKR SCRRRLSDHN  240
ARRRRPQPEA IRFNSARPSS SPSSFYGCHF NFKDGRQQMN VVLNRVPFLA GNSTWQSECG  300
FKVTHAGDFF IRPAKAGDIH RQLSYPCNEV PDAASTIPTD SDKILSFERS TPQVFSQGFE  360
GSALTSNIEV APDLRRALSL LSTNSWGSNE HGSTSLDQLM LANQTSMTQP MINAELQNCP  420
VASSENARME QASLESRVHS LDLHDNGNVQ LQEFQLLKAP YATGCFYSNQ FS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-27	172	245	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	244	KKRSCRRRLSDHNARRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011014587.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
Refseq	XP_011014588.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
Refseq	XP_011014589.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
Refseq	XP_011017576.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
Refseq	XP_011017577.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
Refseq	XP_011017578.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
Swissprot	Q5Z818	2e-80	SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBL	A0A2K1X131	0.0	A0A2K1X131_POPTR; Uncharacterized protein
TrEMBL	A0A385JIS5	0.0	A0A385JIS5_POPTO; Squamosa promoter binding protein-like 2
STRING	POPTR_0018s14680.2	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4630	30	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	3e-54	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu Q, et al. The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol, 2015. 57(10): p. 819-29 [PMID:25677853]