PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009659.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 1069aa MW: 120989 Da PI: 7.4565

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009659.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.3	1.3e-27	616	665	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++isl +l++yF+++++dAA++Lgvc+T+LKriCRq+GIkRWP+Rkik++ CCG009659.2 616 QTISLGVLRQYFAGSLNDAAQSLGVCPTTLKRICRQHGIKRWPSRKIKKV 665 789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.859	601	685	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-24	618	665	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.16E-20	837	927	No hit	No description
SMART	SM00666	9.4E-18	841	924	IPR000270	PB1 domain
PROSITE profile	PS51745	20.435	841	924	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.7E-20	842	921	No hit	No description
CDD	cd06407	3.71E-35	844	922	No hit	No description
Pfam	PF00564	1.8E-14	844	923	IPR000270	PB1 domain
SuperFamily	SSF54928	4.2E-7	932	1012	IPR012677	Nucleotide-binding alpha-beta plait domain
Gene3D	G3DSA:3.30.70.330	4.0E-4	934	996	IPR012677	Nucleotide-binding alpha-beta plait domain
CDD	cd00590	0.0016	934	993	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1069 aa Download sequence Send to blast
MDDHGSSTPN STFDIFSGNV TNWDFMDEIL YQGWFEKDGG FNFLQQGLST SNVLHDPSLY 60 IPVTGTTNWS IASNQKDYQE ETERHCHGNP PLDYPNSTEL VQTELQVEDS VETSTPFSHP 120 ASSRVEAAGL GCEWRMVQRV NPGTSCSVKE RVMQAVGYLK NCVQDRDILI QIWLPMEKEG 180 KRVLATIDQP YFVNPSCKSL ASYRKVSTAY HFQAEEDAKC SVGFPGRVFL EKLPEWTPDV 240 RLFRREEYPH KDHAVQHNIR GSLALPLFKQ GSETCLGIVE IATTIQKISY RSELQDICKV 300 LQAVDLRSSE DFCSPGVETC NRLNRAAVPE ISDIVKSVCK TYRLPLALTW ALCSRQGKIG 360 RQQFPERFSS CISTVDSACF LADKDFSGFH MASFEQYLFL GQGIVGRAFT TQKQCFTNDI 420 ASFSKKDYPL AHHAKIFGLH AAIAIPLRSI STGLVEFVVE LFLPKDCQET EEQKKMWDLL 480 PIVLKQVCRS IQIVMDKELY IGENKSSESY PSKEAPPDES SWIARMVEAQ KKGKSCIVSW 540 DYPKEPKEEF KTIIHWDDSA VEIDQKQVIS ELGQLQQHSR PNINIEGDGV SFAFGGRRSL 600 GSTKIGKKRR TKTEIQTISL GVLRQYFAGS LNDAAQSLGV CPTTLKRICR QHGIKRWPSR 660 KIKKVDHSLR KLQQVINTVE GAKGAFQIES FYPAFPDLSS PKLSNHTSYS SFRRIDNSKH 720 LDSPPDDSCP SGTASKSHSS PCSRSSCSSN CCSGRAQQHA ATTITGSSNG NGSLLAETSN 780 GIFKRTCSNE LAESYSLNNQ GGPDFLVRSQ IQKTRTVSDH IHQSELESPP CFGPSLREGG 840 VFGVKAIYGV EKVRLGLQPK WSLRDLQQEI GKRFEIDDFT CIGLKYMDDD GEWVLLTCDS 900 DLEECKEIHR FSQRNTIKIS LHKYSSPFGF RDYQTLRRAF LKYGDVTELF HLKEEESENW 960 RFCFVSMKSW FSQTELLQYF NDFWFDSFNL RANLARFHQQ PPSPKVNSQR PRASLSRSVN 1020 VILEAMQKLY MGASQALISF DSLKMALDMD NQAWKTYFEA LRPWKSNWV

Sequence ? help Back to Top

Protein Sequence Length: 1069 aa Download sequence Send to blast

MDDHGSSTPN STFDIFSGNV TNWDFMDEIL YQGWFEKDGG FNFLQQGLST SNVLHDPSLY  60
IPVTGTTNWS IASNQKDYQE ETERHCHGNP PLDYPNSTEL VQTELQVEDS VETSTPFSHP  120
ASSRVEAAGL GCEWRMVQRV NPGTSCSVKE RVMQAVGYLK NCVQDRDILI QIWLPMEKEG  180
KRVLATIDQP YFVNPSCKSL ASYRKVSTAY HFQAEEDAKC SVGFPGRVFL EKLPEWTPDV  240
RLFRREEYPH KDHAVQHNIR GSLALPLFKQ GSETCLGIVE IATTIQKISY RSELQDICKV  300
LQAVDLRSSE DFCSPGVETC NRLNRAAVPE ISDIVKSVCK TYRLPLALTW ALCSRQGKIG  360
RQQFPERFSS CISTVDSACF LADKDFSGFH MASFEQYLFL GQGIVGRAFT TQKQCFTNDI  420
ASFSKKDYPL AHHAKIFGLH AAIAIPLRSI STGLVEFVVE LFLPKDCQET EEQKKMWDLL  480
PIVLKQVCRS IQIVMDKELY IGENKSSESY PSKEAPPDES SWIARMVEAQ KKGKSCIVSW  540
DYPKEPKEEF KTIIHWDDSA VEIDQKQVIS ELGQLQQHSR PNINIEGDGV SFAFGGRRSL  600
GSTKIGKKRR TKTEIQTISL GVLRQYFAGS LNDAAQSLGV CPTTLKRICR QHGIKRWPSR  660
KIKKVDHSLR KLQQVINTVE GAKGAFQIES FYPAFPDLSS PKLSNHTSYS SFRRIDNSKH  720
LDSPPDDSCP SGTASKSHSS PCSRSSCSSN CCSGRAQQHA ATTITGSSNG NGSLLAETSN  780
GIFKRTCSNE LAESYSLNNQ GGPDFLVRSQ IQKTRTVSDH IHQSELESPP CFGPSLREGG  840
VFGVKAIYGV EKVRLGLQPK WSLRDLQQEI GKRFEIDDFT CIGLKYMDDD GEWVLLTCDS  900
DLEECKEIHR FSQRNTIKIS LHKYSSPFGF RDYQTLRRAF LKYGDVTELF HLKEEESENW  960
RFCFVSMKSW FSQTELLQYF NDFWFDSFNL RANLARFHQQ PPSPKVNSQR PRASLSRSVN  1020
VILEAMQKLY MGASQALISF DSLKMALDMD NQAWKTYFEA LRPWKSNWV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	606	611	KKRRTK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000890.1	0.0	PREDICTED: protein NLP2-like isoform X1
TrEMBL	B9HPY4	0.0	B9HPY4_POPTR; Uncharacterized protein
STRING	POPTR_0009s16790.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein