PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG009505.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 833aa MW: 91270.6 Da PI: 6.2657 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.1e-19 | 21 | 79 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ CCG009505.1 21 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 79 5679*****************************************************97 PP | |||||||
2 | START | 184.1 | 7.6e-58 | 153 | 360 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 +aee+++++++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++++++s+g g+++l +++ CCG009505.1 153 IAEENLAQFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVVNALSTGngGTIELLYMQ 249 7899******************************************************.8888888888***************************** PP XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS START 98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191 l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p+ ++++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++ CCG009505.1 250 LYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppTQHFVRAEMLPSGYLIRPCEGGGSIIHVVDHMDLEPWSVPEVLRPLYESSTLL 347 ****************************************99999***************************************************** PP HHHHHHHHTXXXX CS START 192 gaktwvatlqrqc 204 ++kt++a+l++++ CCG009505.1 348 AQKTTMAALRHLR 360 *********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.629 | 16 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-16 | 18 | 84 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.98E-17 | 20 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.64E-16 | 21 | 81 | No hit | No description |
Pfam | PF00046 | 1.5E-16 | 22 | 79 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-18 | 23 | 79 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.14E-6 | 73 | 112 | No hit | No description |
PROSITE profile | PS50848 | 25.388 | 143 | 371 | IPR002913 | START domain |
CDD | cd08875 | 9.59E-81 | 147 | 361 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 3.7E-24 | 152 | 358 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.85E-38 | 152 | 363 | No hit | No description |
SMART | SM00234 | 5.3E-45 | 152 | 362 | IPR002913 | START domain |
Pfam | PF01852 | 1.8E-55 | 153 | 360 | IPR002913 | START domain |
Pfam | PF08670 | 6.7E-51 | 692 | 832 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 833 aa Download sequence Send to blast |
MMAVSSTCKD GSTKITMDNG KYVRYTPEQV EALERLYHEC PKPSSMRRQQ LIRECPILSH 60 IEPKQIKVWF QNRRCREKQR KEASRLQAVN RKLTAMNKLL MEENDRLQKQ VSQLATNLAT 120 TDTSCESVVT SGQHHLTPQH PPRDASPAGL LSIAEENLAQ FLSKATGTAV EWVQMPGMKP 180 GPDSIGIVAI SHGCTGVAAR ACGLVGLEPT RVAEILKDRP SWFRDCRAVD VVNALSTGNG 240 GTIELLYMQL YAPTTLAPAR DFWLLRYTSV LEDGSLVVCE RSLNNTQNGP SMPPTQHFVR 300 AEMLPSGYLI RPCEGGGSII HVVDHMDLEP WSVPEVLRPL YESSTLLAQK TTMAALRHLR 360 QVSQEVSQPN VTGWGGRPAA LRALSQRLSK GFNEAVNGFA DEGWSLLESD GIDDVTVLVN 420 SSPAKMMGVN FSYANGFPSM SNAVLCAKAS MLLQNVPPAI LLRFLREHRS EWADSGIDAY 480 AAAAVKAGPC SLPMSRAGNF GGQVILPLAH TIEHEEASSS VLFMEVIKLE NMGYREDMLM 540 PSDVFLLQLC SGVDENAVGT CAELIFAPID ASFSDDAPII PSGFRIIPLD SGLDASSPNR 600 TLDLASALEV GPAGNRASGD LSGRSGCTKS VMTIAFQFAF EMHLQENVAS MARQYVRSII 660 ASVQRVALAL SPSHFGSHAG FRPPPGTPEA HTLARWICES YRCYLGVELL KSEGSESILK 720 TLWHHSDALM CCSLKALPVF TFANQAGLDM LETTLVALQD ITLEKIFDDN GRKTLYSEFP 780 QIMQQGFMCL QGGICLSSMG RPVSYERAVA WKVLNEEESA HCICFMFINW SFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY919623 | 0.0 | AY919623.1 Populus trichocarpa class III HD-Zip protein 8 (HB8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011019595.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-8 | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A2K2A796 | 0.0 | A0A2K2A796_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s25390.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1946 | 33 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |