PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG009416.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HSF | ||||||||
Protein Properties | Length: 425aa MW: 48092.7 Da PI: 4.7723 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.5 | 6e-35 | 44 | 134 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye++ed+++++++sws nsf+v+d+++f++++Lpk+Fkhsnf+SF+RQLn+YgF+kv+ ++ weF+++ F g+k+ll++ik CCG009416.1 44 FLTKTYEMVEDPSTDTVVSWSGGRNSFIVWDSHKFSTTLLPKHFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLLKTIK 131 9********************999*****************************************999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 rk+ CCG009416.1 132 RKR 134 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.6E-59 | 40 | 133 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.2E-37 | 40 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.5E-34 | 40 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-30 | 44 | 133 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-18 | 44 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-18 | 82 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 83 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-18 | 95 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0034620 | Biological Process | cellular response to unfolded protein | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MEGVEVKEEE TVTCTGGGAS SSSSSSSFSP LPMEGLNEVG PPPFLTKTYE MVEDPSTDTV 60 VSWSGGRNSF IVWDSHKFST TLLPKHFKHS NFSSFIRQLN TYGFRKVDPD RWEFANEGFL 120 GGQKHLLKTI KRKRHLSQTT QQQGGGACIE LGQFEFEKEL EKLKRDRNVL MAEIVRLRQQ 180 QQQSREHVAA MEDRLRSTER KQQRVMTFLA KALNNPSFIQ QFAQRAAQRR EIRGVEIGRK 240 RRLTASPSVE NLQEVASVAL GSSQFVDYIN QDLPTMENEM ETLFSAALDN ESSSDIKDPI 300 VSSMHTASGG SNLDAVNETI WEEFLTDDLI SGEPNEVVSD EPEVDVEVED LIAKPVDWSD 360 DFQELVDQMG YLRREWWKFQ HGQQMLLLSC RNANEEFFGG VSGFESSKRV LDSTALYVGF 420 LNSRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-24 | 18 | 133 | 1 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-24 | 18 | 133 | 1 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-24 | 18 | 133 | 1 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP013978 | 0.0 | KP013978.1 Populus simonii heat shock transcription factor A2 (HsfA2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011019423.1 | 0.0 | PREDICTED: heat shock factor protein HSF30 | ||||
Refseq | XP_011019424.1 | 0.0 | PREDICTED: heat shock factor protein HSF30 | ||||
Swissprot | P41152 | 1e-142 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A3N7F7V4 | 0.0 | A0A3N7F7V4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s24330.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8225 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-119 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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