PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009383.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 381aa MW: 43693.6 Da PI: 5.1647

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009383.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.8	2.9e-25	291	339	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l+d ++yF+lpi+dAA+ L +c+Tv+K+iCR++G+ RWPhRkiks+ CCG009383.1 291 RLTLDDFRQYFHLPIEDAARRLHLCPTVVKKICRKFGMTRWPHRKIKSI 339 799********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.223	279	359	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-23	292	339	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MADPRSVVPY HDPYDSPIDY EHLNFMNDAN PSLAGLSSDN EPTPAIPESF SGSANANANI 60 LDPNNPYEDP MAWNFYYENL RVQSHEAGPS HQNQGQSSSG PLPYTPFPNA SFPDGQTSNA 120 SGRSEEIFLD ERNIAIWPPE PVPFQCTCCQ VLREIIHTDG NYTTKLEIHG RMGIICHAIL 180 ENRDYVKAIH PQYYMFDFCK KSLENVKEFL QKYCDDRRQA GFIMVQDPHS FFYEALCVGY 240 EWTDDMHFDE FHDPSPSNSE DRQVTNHGEG EIETERTTRS NLALQRARAG RLTLDDFRQY 300 FHLPIEDAAR RLHLCPTVVK KICRKFGMTR WPHRKIKSIQ RQLTDLQVLL NSNDAEERVR 360 AQVEIMRLQE EIRNACSGSA G

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MADPRSVVPY HDPYDSPIDY EHLNFMNDAN PSLAGLSSDN EPTPAIPESF SGSANANANI  60
LDPNNPYEDP MAWNFYYENL RVQSHEAGPS HQNQGQSSSG PLPYTPFPNA SFPDGQTSNA  120
SGRSEEIFLD ERNIAIWPPE PVPFQCTCCQ VLREIIHTDG NYTTKLEIHG RMGIICHAIL  180
ENRDYVKAIH PQYYMFDFCK KSLENVKEFL QKYCDDRRQA GFIMVQDPHS FFYEALCVGY  240
EWTDDMHFDE FHDPSPSNSE DRQVTNHGEG EIETERTTRS NLALQRARAG RLTLDDFRQY  300
FHLPIEDAAR RLHLCPTVVK KICRKFGMTR WPHRKIKSIQ RQLTDLQVLL NSNDAEERVR  360
AQVEIMRLQE EIRNACSGSA G

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024458585.1	0.0	uncharacterized protein LOC18100642
TrEMBL	A0A2K2A6B3	0.0	A0A2K2A6B3_POPTR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-14	NIN like protein 7