PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009287.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 533aa    MW: 59118.9 Da    PI: 4.8163
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009287.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4501.5e-1371635331374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+e+L +cA a+++gd+  +++l+++l++++s +g+p+qRl ay++e+L arla+s+s++y+al+++e +    ++ l+++ l++e++P++kf+++ a
  CCG009287.1 163 LKEALCSCALAIANGDMFTVEWLMSELRQMVSVTGEPIQRLGAYMLEGLVARLASSGSSIYNALRCKEPA---GADLLSYMLLLYEACPYFKFGYMSA 257
                  5789*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI +a++ e  vHiiDf+i qG QW++L+qaLa+Rp+gpp++RiTg+++++s   +   l  +g+rL k+Ae+ +vpfef++ +  + +++++e+L
  CCG009287.1 258 NGAIADAMKDEISVHIIDFQIAQGSQWVTLIQALAARPGGPPRIRITGIDDSTSAyaRGGGLDIVGKRLLKLAESYKVPFEFHT-AGVSASEIQIENL 354
                  ***************************************************998899999************************.8999********* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   ++pgEa+aVn++l lh+l+desv ++++rd++L+lvkslsPkvv++veqe+++n+ +F++rf+e+l+yy a+f+s++++lpre++eri+vE+++l+r
  CCG009287.1 355 GIQPGEAVAVNFALTLHHLPDESVGTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTVPFFARFVETLNYYLAIFESIDVTLPRENKERINVEQHCLAR 452
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e+vn++acegaer+erhe l+kWr+r+e+aGF+p+pls+++++++k ll++++++ y++ee++g+l+lgW++rpLv+ +aWr
  CCG009287.1 453 EVVNIIACEGAERVERHEPLGKWRSRFEMAGFTPYPLSSFVNSTIKILLENYSEK-YTLEERDGALFLGWMNRPLVASCAWR 533
                  *****************************************************65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.337137514IPR005202Transcription factor GRAS
PfamPF035145.3E-135163533IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MQTSQKKTIS DGSRRYGDQP MQYQESYCWP PIQNIDAGSQ GMHLSPMTFD QNCTLESSSE  60
TSAYPVHNSP STASFSPNES VVSQPNSQSY PSDLQDSSEN ACGSPTSESY VTHKLRELET  120
AMLGPDSDNL DMYNMTAMPG PNQIVSEAEK WKVLVEMMSR GDLKEALCSC ALAIANGDMF  180
TVEWLMSELR QMVSVTGEPI QRLGAYMLEG LVARLASSGS SIYNALRCKE PAGADLLSYM  240
LLLYEACPYF KFGYMSANGA IADAMKDEIS VHIIDFQIAQ GSQWVTLIQA LAARPGGPPR  300
IRITGIDDST SAYARGGGLD IVGKRLLKLA ESYKVPFEFH TAGVSASEIQ IENLGIQPGE  360
AVAVNFALTL HHLPDESVGT QNHRDRLLRL VKSLSPKVVT LVEQESNTNT VPFFARFVET  420
LNYYLAIFES IDVTLPRENK ERINVEQHCL AREVVNIIAC EGAERVERHE PLGKWRSRFE  480
MAGFTPYPLS SFVNSTIKIL LENYSEKYTL EERDGALFLG WMNRPLVASC AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-661655336375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014635.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_011014636.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A2K2C9C40.0A0A2K2C9C4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s37270.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]