PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009274.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 538aa    MW: 59025.3 Da    PI: 7.2445
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009274.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.23.9e-14127166242
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                  ++++CnCk+s+Clk+YCeCfa+g++C+  C+C +C N+ e+
  CCG009274.1 127 KQRQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCYNNVEN 166
                  789*************************.********9875 PP
2TCR51.12.7e-16211250140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  CCG009274.1 211 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 250
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.4E-15126166IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.442127251IPR005172CRC domain
PfamPF036387.2E-11129163IPR005172CRC domain
SMARTSM011148.4E-20211252IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-12214249IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGESEGSEFP PKKQQQQSEN AYFQTKKLAR QLDFTQGVLP DHPQSQPSPL QKPPLLVSPA  60
AAQSQPQPQP QPHPQSQLQL QPQVAEIQVV PQQQTQQQQQ PVRAVKPESP KSIPIPNTEL  120
KDGTPKKQRQ CNCKHSRCLK LYCECFASGT YCDGCNCVNC YNNVENEAAR REAVEATLER  180
NPNAFRPKIA SSPHGTRDSR EETGDGLVFV KHNKGCHCKK SGCLKKYCEC FQANILCSEN  240
CKCMDCKNFE GSEERQALFH GDHGNNMAYI QQAANAAITG AIGSSGYASP PVSRKRKGQE  300
LFFGQTVKDQ SFDRLGHFQQ GSHTRPPAPS SSLPSNPVAR AGNAITLGPS KITYRSLLAD  360
IIQPQDLKEL CSVLVVLSGE AAKTFSDQRN SMEKRVEDQR ETLLASSTQE RLQSHKESDA  420
DKIVANDCSS ANHADKVGPD DSSLDGADMP KGRPMSPGTL ELMCDEQDTM LMAAASPNGL  480
MGHGCNTSSQ LPCGQGMAEA HAEQERIVLT KFRDCLNRLI TFGEIKGEFL FPVSNFLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-321192602132Protein lin-54 homolog
5fd3_B3e-321192602132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166730.0AC216673.1 Populus trichocarpa clone POP019-C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048388.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2K1WXT60.0A0A2K1WXT6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s16340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-179Tesmin/TSO1-like CXC domain-containing protein