PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009216.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 288aa    MW: 31411.2 Da    PI: 4.4955
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009216.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind119.51.9e-37101012102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+e+g++fvv+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g+kell +i+
   CCG009216.1  10 FLTKTYQLVDDPSTDDVISWNETGTTFVVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFRRGHKELLAEIR 97 
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   CCG009216.1  98 RRKT 101
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-39293IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.9E-61699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.84E-35699IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAQRSAPAPF LTKTYQLVDD PSTDDVISWN ETGTTFVVWK TADFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFRRGHK ELLAEIRRRK TAAPSPTTQT SPAGKSGGAS  120
SSSNSGEDLG STSTSSPDSK NPGSVETAAT QVADLSIENE QLKKDNDVLS SELEQAKKQC  180
GELINFLTEY VKVSPDQINR IIGCGGSTCN GEADVGDNQS EDDDDDDDDE NTSDDTDHDD  240
TDHDGDGGEG GGLKLFGVLL KCQNKKKRGR DEKMGLGGPR AKEIKICN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-26110311124Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140040.0KP014004.1 Populus simonii heat shock transcription factor B1 (HsfB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043547.10.0PREDICTED: heat shock factor protein HSF24
SwissprotP223351e-105HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A1L6K4J31e-169A0A1L6K4J3_POPTO; Heat shock transcription factor B1
STRINGcassava4.1_013185m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-79heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]