PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008949.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 258aa MW: 29677.1 Da PI: 4.8049

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008949.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.3	8.6e-55	23	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv++yLk+k++g++++l ++i+e+d+yk+ePwdL k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v + + CCG008949.1 23 LPPGFRFHPTDEELVNYYLKRKINGQEIDL-DIIPEIDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVNC-Q 118 79**************************.99**********84335556888**********************************.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kktLv+y+grap+g +tdWvmheyrl CCG008949.1 119 NRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 150 999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-64	18	174	IPR003441	NAC domain
PROSITE profile	PS51005	59.963	23	173	IPR003441	NAC domain
Pfam	PF02365	3.2E-30	24	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MQKVFAKKAG GHREGKEMAP VGLPPGFRFH PTDEELVNYY LKRKINGQEI DLDIIPEIDL 60 YKCEPWDLAE KSFLPSRDPE WYFFGPRDRK YPNGFRTNRA TRAGYWKSTG KDRRVNCQNR 120 AIGMKKTLVY YRGRAPQGIR TDWVMHEYRL DDKECEDTSG IQDSYALCRV FKKNGICSEI 180 EEQGQCTTSL SLTESSSQGV LNEYETMSPD VPIASSSCTE EEDKDDSWMQ FITDDPWYCS 240 SNNAMVGGEE ISQVTFTD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-56	10	173	2	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000782.1	0.0	PREDICTED: NAC domain-containing protein 86-like isoform X3
Swissprot	Q9FFI5	3e-91	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A3N7HAT9	0.0	A0A3N7HAT9_POPTR; Uncharacterized protein
STRING	POPTR_0012s03510.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9564	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-124	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]