PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008945.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 719aa    MW: 78977.7 Da    PI: 6.7484
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008945.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-182782156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++ ++ t++q++ Le++F++ ++p++++r +L+++lgL  rq+k+WFqNrR+++k
  CCG008945.1 27 KKRYHRRTAHQIQKLESMFKEFPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 82
                 5677889**********************************************998 PP
2START179.42.1e-562254542206
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  +a  a++el+++ +a+ep+W+kss    + +n d + ++f+++ +       ++e +r+sgvv+m+ + lv  ++d+  +W e ++     a+t+evi
  CCG008945.1 225 VAANAMEELLRLLQANEPLWMKSStdgrDVLNLDSYQRIFPRAMShlknpnVRIESSRDSGVVIMNGVALVDMFMDST-KWVESFPtivsVAKTIEVI 321
                  67899*********************99999999999999998779999999**************************.**********9******** PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE........EEEEEEE CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh........skvtwve 168
                  ssg      g lqlm+ elq+lsplvp R+f ++Ry++q ++g w+iv+vS d +q+ ++     R+++lpSg+li++++ng+         +v+wve
  CCG008945.1 322 SSGmlgnhsGSLQLMYEELQVLSPLVPtREFCILRYCQQIEQGLWAIVSVSYDIPQFASQ----FRCHRLPSGCLIQDMPNGYsklltssvKQVIWVE 415
                  *********************************************************987....*******************99998766689**** PP

                  -EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 169 hvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                  hv+ +++ p h+l+r l++sg+a+ga +w+atlqr ce+
  CCG008945.1 416 HVEIEDKAPtHQLYRDLIHSGMAFGAERWLATLQRMCER 454
                  *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.8E-191184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-211378IPR009057Homeodomain-like
PROSITE profilePS5007117.8312484IPR001356Homeobox domain
SMARTSM003893.4E-172588IPR001356Homeobox domain
CDDcd000861.04E-172685No hitNo description
PfamPF000461.3E-152782IPR001356Homeobox domain
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PROSITE profilePS5084851.091215457IPR002913START domain
SuperFamilySSF559612.06E-34216455No hitNo description
CDDcd088757.88E-117219453No hitNo description
SMARTSM002344.5E-51224454IPR002913START domain
PfamPF018526.3E-49225454IPR002913START domain
Gene3DG3DSA:3.30.530.206.1E-7293449IPR023393START-like domain
SuperFamilySSF559612.61E-20475711No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MEYGSAGGGS GGGGAGDHDS SDPQRRKKRY HRRTAHQIQK LESMFKEFPH PDEKQRLQLS  60
RELGLAPRQI KFWFQNRRTQ MKAQHERADN SSLRAENDKI RCENIAIREA LKNVICPSCG  120
APPVTEDSYF DEQKLRIENA QLKEELDRVS SIAAKYIGRP ISQLPPVQPV HISSLDLSMG  180
NFGGQGLGGP SLDLDLDLDL IPTNSNFAFQ PPAISDMDKS LMTDVAANAM EELLRLLQAN  240
EPLWMKSSTD GRDVLNLDSY QRIFPRAMSH LKNPNVRIES SRDSGVVIMN GVALVDMFMD  300
STKWVESFPT IVSVAKTIEV ISSGMLGNHS GSLQLMYEEL QVLSPLVPTR EFCILRYCQQ  360
IEQGLWAIVS VSYDIPQFAS QFRCHRLPSG CLIQDMPNGY SKLLTSSVKQ VIWVEHVEIE  420
DKAPTHQLYR DLIHSGMAFG AERWLATLQR MCERVACQMV SGSSTRDLGG VIPSPEGKRS  480
MMKLGQRMVS SFCSSISTSN SHRWSTLSGL HDVGVRVTLH KSTDPGQPNG VVLSAATTFS  540
LPVSPQIVFN FFKDEKTRPQ WDVLSSGNAV QEVAHIANGS HPGNCISVLR AYNTSQNNML  600
ILQESCIDSS AALVVYCPVD LPAINIAMSG EDPSYIPLLP SGFTISPDGY PDQGDGASTS  660
SNTQGRMTRS SGSLITVAFQ ILVSSLPSAR LNLESVNTVN SLIGTTVQQI KATLSCPGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000766.10.0PREDICTED: homeobox-leucine zipper protein HDG11-like
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLA0A2K1Y8G40.0A0A2K1Y8G4_POPTR; Uncharacterized protein
STRINGPOPTR_0015s05050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  5. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  6. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  7. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  8. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  9. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  10. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]