PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG008932.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 456aa MW: 51124.5 Da PI: 8.6374 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.4e-06 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H CCG008932.1 58 YVCEICNQGFQRDQNLQMHRRRH 80 9*********************9 PP | |||||||
2 | zf-C2H2 | 16 | 3.4e-05 | 135 | 157 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ CCG008932.1 135 WVCEKCSKGYAVQSDYKAHLKTC 157 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.2E-5 | 55 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 57 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.97 | 58 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS01359 | 0 | 60 | 140 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 99 | 129 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.8E-4 | 126 | 156 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 60 | 135 | 162 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MLANNSPSSS LPCSSEPFSC LENGNNINKR KRRPAGTPDP DAEVVSLSPK TLLESDRYVC 60 EICNQGFQRD QNLQMHRRRH KVPWKLLKRE TPVVRKRVFV CPEPSCLHHD PCHALGDLVG 120 IKKHFRRKHS NHKQWVCEKC SKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ 180 DACNMGNLRS ESRSLQPAAC LSRTASSPSP SSDTNFSTAP WLPLLIPRTT DHAMFFITPT 240 TTSNVVDKSD SSKSAAHYHN LELQLSTASG NPFEISVSPK REDNHSTQLQ LSIGSSDVSD 300 RNESNISYAD KDHDGKSSPR ENNNGIPRPE LGASRIKEQV IREQLMMAMA EKIHAEEARQ 360 QAKRQIELAE QEFANAKRIR QKAQAELDKA QALKQHAINQ INSTILQITC HACKQKFHAR 420 TQADENSLVL SFMSSAITED EVEHINGIGI AKTFNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-18 | 133 | 184 | 5 | 56 | Zinc finger protein JACKDAW |
5b3h_F | 4e-18 | 133 | 184 | 5 | 56 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147359 | 0.0 | EF147359.1 Populus trichocarpa clone WS0122_O19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000748.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like | ||||
Swissprot | F4IPE3 | 1e-147 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | B9I4V8 | 0.0 | B9I4V8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s03730.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1769 | 32 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-146 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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