PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG008927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 181aa MW: 20600.9 Da PI: 7.1512 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88.9 | 4.8e-28 | 9 | 59 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 YkeCl+NhAaslG++a DGCgEf+ + +++ ++l+CaACgCHRnFHR+ + CCG008927.1 9 LYKECLRNHAASLGSYARDGCGEFTLD---DTSLSTLQCAACGCHRNFHRKVSY 59 7*************************8...6789*****************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.7E-23 | 9 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-17 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.709 | 10 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.8E-23 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.35E-16 | 99 | 164 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-29 | 99 | 165 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.2E-31 | 106 | 164 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MESDSTNDLY KECLRNHAAS LGSYARDGCG EFTLDDTSLS TLQCAACGCH RNFHRKVSYS 60 NRRDHIMHSP SSETVVMEMI DYAEGNNERN SRPPMMVVES GERSGKKRFR TKFTAEQKEK 120 MTEFAEKLGW KLQRKDEEDE VERFCEGIGV TRQVFKVWMH NHKNSSTTSA SPGNASSLTT 180 Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-22 | 107 | 170 | 18 | 80 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000742.1 | 1e-136 | PREDICTED: zinc-finger homeodomain protein 1-like | ||||
Swissprot | Q9SB61 | 2e-41 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A2K1Y8K4 | 1e-128 | A0A2K1Y8K4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s03770.1 | 1e-128 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 7e-44 | homeobox protein 22 |
Publications ? help Back to Top | |||
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