PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008904.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HD-ZIP

Protein Properties

Length: 720aa MW: 79151.6 Da PI: 6.0827

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008904.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62	9.1e-20	53	108	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k CCG008904.1 53 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 108 688999***********************************************998 PP
2	START	213.2	9.2e-67	242	461	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 e+a +a++el+++a+a+ep+W + e +n++e+l++f+++ + ++ea+r+s+vv+m +++lve+l+d + qW++ + +a+tlev+s CCG008904.1 242 EVAVAAMEELMRMAQAGEPLWIQGEnntEVLNEEEYLRTFTRGIGprplgMRSEASRESAVVIMSHVNLVEILMDAN-QWSTIFCgivsRAMTLEVLS 338 68899******************99999********999****************************.**99999***** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 +g galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds +++ v +++++ Sg+li++++ng+skv+wve++++++r++ CCG008904.1 339 TGvagnynGALQVMTAEFQVPSPLVPpRENYFVRYCKQHNDGTWAVVDVSLDSLRPNL----VSKCRRRSSGCLIQELPNGYSKVVWVENTEVDDRSV 432 ****************************************************96....799999************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqcek 206 h+++r+lv+sgla+gak+wv tl+rqce+ CCG008904.1 433 HSIYRPLVNSGLAFGAKRWVGTLDRQCER 461 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-23	35	108	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.3E-19	36	110	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.844	50	110	IPR001356	Homeobox domain
SMART	SM00389	8.2E-19	51	114	IPR001356	Homeobox domain
CDD	cd00086	8.67E-19	52	111	No hit	No description
Pfam	PF00046	2.3E-17	53	108	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	85	108	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.618	233	464	IPR002913	START domain
SuperFamily	SSF55961	2.2E-34	233	463	No hit	No description
CDD	cd08875	3.30E-123	237	460	No hit	No description
Pfam	PF01852	1.5E-55	242	461	IPR002913	START domain
SMART	SM00234	8.7E-63	242	461	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.4E-5	339	460	IPR023393	START-like domain
SuperFamily	SSF55961	3.48E-27	480	712	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MFDSHHVPDM TLKSSENDLS KLKDDDYETR SGTETMEAPS GDDQDPSGQR PRKKRYHRHT 60 QRQIQEMEAF FKECPHPDDK QRKELSRELG LEPLQVKFWF QNKRTQMKAQ HERSENSILK 120 AENEKLRMEN NRYKEALSSA SCPNCGGPAA LGEMSFDEQH LRIENARLRE EIDRISGIAA 180 KYVGKPLSSL SNLSHHLPFR SLDLGVSNYG AHSGFVGEIF GATALLGEVT GPTEADKPMI 240 VEVAVAAMEE LMRMAQAGEP LWIQGENNTE VLNEEEYLRT FTRGIGPRPL GMRSEASRES 300 AVVIMSHVNL VEILMDANQW STIFCGIVSR AMTLEVLSTG VAGNYNGALQ VMTAEFQVPS 360 PLVPPRENYF VRYCKQHNDG TWAVVDVSLD SLRPNLVSKC RRRSSGCLIQ ELPNGYSKVV 420 WVENTEVDDR SVHSIYRPLV NSGLAFGAKR WVGTLDRQCE RLASSMATNI PTGDLCVITT 480 PDGRKSILKL AERMVISFCT GVGASTAHTW TTLSATGSDD VRVMTRKSMD DPGRPPGIVL 540 SAATSFWIPV PSKKVFDFLK DENHRSEWDI LSNGGQVQEM AHIANGRNPG NCVSLLRVNS 600 TNSSQSNMLI LQESCTDSTG SYVVYAPVDI SAMNIVLSGR DPDYVALLPS GFAILPDGPG 660 NGHAGILDVG SGGSLLTVAF QILVDSVPSV KLSLGSVATV NSLIKCTVER IKAAVMCDNP

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MFDSHHVPDM TLKSSENDLS KLKDDDYETR SGTETMEAPS GDDQDPSGQR PRKKRYHRHT  60
QRQIQEMEAF FKECPHPDDK QRKELSRELG LEPLQVKFWF QNKRTQMKAQ HERSENSILK  120
AENEKLRMEN NRYKEALSSA SCPNCGGPAA LGEMSFDEQH LRIENARLRE EIDRISGIAA  180
KYVGKPLSSL SNLSHHLPFR SLDLGVSNYG AHSGFVGEIF GATALLGEVT GPTEADKPMI  240
VEVAVAAMEE LMRMAQAGEP LWIQGENNTE VLNEEEYLRT FTRGIGPRPL GMRSEASRES  300
AVVIMSHVNL VEILMDANQW STIFCGIVSR AMTLEVLSTG VAGNYNGALQ VMTAEFQVPS  360
PLVPPRENYF VRYCKQHNDG TWAVVDVSLD SLRPNLVSKC RRRSSGCLIQ ELPNGYSKVV  420
WVENTEVDDR SVHSIYRPLV NSGLAFGAKR WVGTLDRQCE RLASSMATNI PTGDLCVITT  480
PDGRKSILKL AERMVISFCT GVGASTAHTW TTLSATGSDD VRVMTRKSMD DPGRPPGIVL  540
SAATSFWIPV PSKKVFDFLK DENHRSEWDI LSNGGQVQEM AHIANGRNPG NCVSLLRVNS  600
TNSSQSNMLI LQESCTDSTG SYVVYAPVDI SAMNIVLSGR DPDYVALLPS GFAILPDGPG  660
NGHAGILDVG SGGSLLTVAF QILVDSVPSV KLSLGSVATV NSLIKCTVER IKAAVMCDNP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU278766	1e-138	GU278766.1 Populus balsamifera isolate POR11 haplotype A L1 specific homeobox gene (ML1) / ovulespecific homeobox protein A20 gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000687.1	0.0	PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
Refseq	XP_011000688.1	0.0	PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
Refseq	XP_011000689.1	0.0	PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
Refseq	XP_011000690.1	0.0	PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A385JIE6	0.0	A0A385JIE6_POPTO; Protodermal factor 2
TrEMBL	B9HZK9	0.0	B9HZK9_POPTR; Uncharacterized protein
STRING	POPTR_0011s00520.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1508	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]