PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG008866.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 436aa MW: 47198.5 Da PI: 5.6051 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 376.8 | 2.7e-115 | 74 | 433 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 lLl+cAe+v+ ++l+ a+ lL ++ el+sp g++ +R+ ayf+ AL+ar+++s+ ++y+ l +++ + ++s++ ++al+ ++ +sP++kfsh+taNq CCG008866.1 74 GLLLQCAECVAMDNLNDATDLLPEIAELSSPFGSSPERVGAYFAHALQARVVGSCLGTYSPLVSKSVTLTQSQRLFNALQSYNSISPLVKFSHFTANQ 171 58******************************************************************99**************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 aI +a++ge+rvH+iD+di+qGlQWp L++ LasRp++ s+RiTg+gs s+e le+tg+rLa+fA++lg+pfef++l k + +l++L v+p CCG008866.1 172 AIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRPKKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFHPLEGKIGNVTDLSQLGVRP 265 *************************************************....9**************************9777777779******** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +Ea++V++++ h l+d ++s +Lkl+ l+Pk+++ veq+++h ++sFl rf+eal+yysalfd+l +l+ +s er++vE++l+g ei+n CCG008866.1 266 REAIVVHWMH--HCLYDVTGSDLG----TLKLLTLLRPKLITTVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLGVDSVERHMVEQQLFGCEIRN 356 *********9..888888888888....**********************.789******************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +va g +r+ + + +e+W + l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+gsl lgWkd +L+++SaW+ CCG008866.1 357 IVAVGGPKRTGEVK-VERWGDELRRVGFEPVSLGGSPAAQASLLLGMFPWKGYTLVEENGSLKLGWKDLSLLTASAWQ 433 ********998887.9*************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.414 | 46 | 413 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.5E-113 | 74 | 433 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MLQSLIPQSP INSTDPNNSS SPSMKSKRAA ADLTAGDSSG EDPSSKRVSY EKPATEIDRG 60 GDDGGEASGL RLLGLLLQCA ECVAMDNLND ATDLLPEIAE LSSPFGSSPE RVGAYFAHAL 120 QARVVGSCLG TYSPLVSKSV TLTQSQRLFN ALQSYNSISP LVKFSHFTAN QAIFQALDGE 180 DRVHVIDLDI MQGLQWPGLF HILASRPKKI RSMRITGFGS SSELLESTGR RLADFASSLG 240 LPFEFHPLEG KIGNVTDLSQ LGVRPREAIV VHWMHHCLYD VTGSDLGTLK LLTLLRPKLI 300 TTVEQDLSHG GSFLGRFVEA LHYYSALFDA LGDGLGVDSV ERHMVEQQLF GCEIRNIVAV 360 GGPKRTGEVK VERWGDELRR VGFEPVSLGG SPAAQASLLL GMFPWKGYTL VEENGSLKLG 420 WKDLSLLTAS AWQPSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-166 | 53 | 434 | 2 | 379 | Protein SCARECROW |
5b3h_D | 1e-166 | 53 | 434 | 2 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000635.1 | 0.0 | PREDICTED: scarecrow-like protein 23 isoform X1 | ||||
Swissprot | Q9FHZ1 | 0.0 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | A0A2K1X9C0 | 0.0 | A0A2K1X9C0_POPTR; GRAS family protein | ||||
STRING | POPTR_0016s02030.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2068 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-180 | GRAS family protein |
Publications ? help Back to Top | |||
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