PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008866.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 436aa    MW: 47198.5 Da    PI: 5.6051
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008866.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.82.7e-115744333374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                   lLl+cAe+v+ ++l+ a+ lL ++ el+sp g++ +R+ ayf+ AL+ar+++s+ ++y+ l +++ + ++s++ ++al+ ++ +sP++kfsh+taNq
  CCG008866.1  74 GLLLQCAECVAMDNLNDATDLLPEIAELSSPFGSSPERVGAYFAHALQARVVGSCLGTYSPLVSKSVTLTQSQRLFNALQSYNSISPLVKFSHFTANQ 171
                  58******************************************************************99**************************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                  aI +a++ge+rvH+iD+di+qGlQWp L++ LasRp++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++l  k  +  +l++L v+p
  CCG008866.1 172 AIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRPKKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFHPLEGKIGNVTDLSQLGVRP 265
                  *************************************************....9**************************9777777779******** PP

         GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                  +Ea++V++++  h l+d ++s       +Lkl+  l+Pk+++ veq+++h ++sFl rf+eal+yysalfd+l  +l+ +s er++vE++l+g ei+n
  CCG008866.1 266 REAIVVHWMH--HCLYDVTGSDLG----TLKLLTLLRPKLITTVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLGVDSVERHMVEQQLFGCEIRN 356
                  *********9..888888888888....**********************.789******************************************** PP

         GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +va  g +r+ + + +e+W + l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+gsl lgWkd +L+++SaW+
  CCG008866.1 357 IVAVGGPKRTGEVK-VERWGDELRRVGFEPVSLGGSPAAQASLLLGMFPWKGYTLVEENGSLKLGWKDLSLLTASAWQ 433
                  ********998887.9*************************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.41446413IPR005202Transcription factor GRAS
PfamPF035149.5E-11374433IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MLQSLIPQSP INSTDPNNSS SPSMKSKRAA ADLTAGDSSG EDPSSKRVSY EKPATEIDRG  60
GDDGGEASGL RLLGLLLQCA ECVAMDNLND ATDLLPEIAE LSSPFGSSPE RVGAYFAHAL  120
QARVVGSCLG TYSPLVSKSV TLTQSQRLFN ALQSYNSISP LVKFSHFTAN QAIFQALDGE  180
DRVHVIDLDI MQGLQWPGLF HILASRPKKI RSMRITGFGS SSELLESTGR RLADFASSLG  240
LPFEFHPLEG KIGNVTDLSQ LGVRPREAIV VHWMHHCLYD VTGSDLGTLK LLTLLRPKLI  300
TTVEQDLSHG GSFLGRFVEA LHYYSALFDA LGDGLGVDSV ERHMVEQQLF GCEIRNIVAV  360
GGPKRTGEVK VERWGDELRR VGFEPVSLGG SPAAQASLLL GMFPWKGYTL VEENGSLKLG  420
WKDLSLLTAS AWQPSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-166534342379Protein SCARECROW
5b3h_D1e-166534342379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000635.10.0PREDICTED: scarecrow-like protein 23 isoform X1
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2K1X9C00.0A0A2K1X9C0_POPTR; GRAS family protein
STRINGPOPTR_0016s02030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-180GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]