PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG008738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 612aa MW: 68286.1 Da PI: 6.5263 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 94.2 | 1.2e-29 | 63 | 147 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe++aL+++r++m+ ++r++++k+plWe+vs+k++e g++rs+k+Ckek+en+ k++k++k+g++++ ++ +t+++fdqlea CCG008738.1 63 RWPRQETMALLKIRSDMDVAFRDASAKGPLWEDVSRKLAELGYNRSAKKCKEKFENVYKYHKRTKDGRSGK--QEGKTYRFFDQLEA 147 8********************************************************************96..55557*******85 PP | |||||||
2 | trihelix | 102.1 | 4.3e-32 | 434 | 519 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi +r++++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a CCG008738.1 434 RWPKVEVEALIGLRTNLDCKYQENGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 519 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.2E-4 | 60 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.6E-19 | 62 | 147 | No hit | No description |
PROSITE profile | PS50090 | 6.992 | 62 | 120 | IPR017877 | Myb-like domain |
CDD | cd12203 | 3.16E-25 | 62 | 127 | No hit | No description |
SMART | SM00717 | 1.3 | 431 | 493 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 3.2E-22 | 433 | 520 | No hit | No description |
CDD | cd12203 | 1.08E-27 | 433 | 498 | No hit | No description |
PROSITE profile | PS50090 | 6.864 | 433 | 491 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MLGDSSSVLA TTTTTLAASG GGGVGNREAP PLTGGHHEGR NIDVGGEDDK GVIEGHRGIG 60 GNRWPRQETM ALLKIRSDMD VAFRDASAKG PLWEDVSRKL AELGYNRSAK KCKEKFENVY 120 KYHKRTKDGR SGKQEGKTYR FFDQLEAFES HPPSLSSPLP LPPQPTKPHI PPANTLAMPV 180 VNPSPNVVGT SHNTVPSTAA ATLATDYTSQ GIVTSAINLA VPPFPSTDPT ISPPSQATNP 240 TNHPQTNIPS SFPNFSSDLN SNFTSSSTSS DVELQGRRKR KRKWKDFFER LMTEVIQKQE 300 ETQNKFLEAI EKREHERMVR EESWRMQEMA RINRERETSA QERSTAAIKG AAVMAFLQKL 360 SEQQNPGQVQ NNPPPTQPPP PPPALPPISQ QTPTPTTPPP LPEAQVPPPQ PVANLDIMKS 420 DNGDQNFMSA SSSRWPKVEV EALIGLRTNL DCKYQENGPK GPLWEEISAG MRKLGYNRNA 480 KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHQLDAL YKEKNKIDGP SNSTHHMKPQ 540 NLVPLTVLPE QQWPPPQQEH RPDSVMEDLE SDDHQNQEDE DDKFVDDEDE DEDEASGYEI 600 VANKQTSMNT AR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 281 | RRKRKR |
2 | 276 | 282 | RRKRKRK |
3 | 277 | 282 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU227602 | 0.0 | CU227602.1 Populus EST from severe drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042850.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-139 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A2K2BEP7 | 0.0 | A0A2K2BEP7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s06920.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-159 | Trihelix family protein |