PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008508.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 440aa MW: 50266.6 Da PI: 7.0043

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008508.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.8	2.5e-27	77	158	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y+++++ CCG008508.1 77 WVQDETRSLIAFRREMDGLFNTSKSNKHLWEQISTKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 158 ******************************************************************84...556899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-4	67	138	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.397	69	133	IPR017877	Myb-like domain
SMART	SM00717	3.1E-4	73	135	IPR001005	SANT/Myb domain
CDD	cd12203	1.13E-29	75	140	No hit	No description
Pfam	PF13837	1.5E-21	76	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MYLSDKPRPL DFYKEEVGPS SSRDNMIIEV VSSNGDLPPL HLHPITAATN PHQMILGESS 60 GDDNHEVKAP KKRAETWVQD ETRSLIAFRR EMDGLFNTSK SNKHLWEQIS TKMREKGFDR 120 SPTMCTDKWR NLLKEFKKAK HQDRGSGSAK MSYYKEIDEI LRGRNKNSQY KCPTPKVDSY 180 MQFSDKGFED TSISFGPVEA SARPTLNLER RLDHDGHPLA IAAADAVAAS GVPPWNWRET 240 PGNGAESQSF GGRVISVKSG DYTRRIGIDG TTDAIREAIK SAFRLRTKRA FWLEDEDQII 300 RALDREMPLG NYTLHLDEGL AIKVCLYDQS DHMPVHTEEK IFYTEDDYRD FLSRRGWTCL 360 REFDGYRNID SMDDLQHDAI YRGVSRVESV RLKILAMQSE SVPSSIAGDI VFFSVISSFP 420 GKSKDYKILF LGYVTFHPWR

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MYLSDKPRPL DFYKEEVGPS SSRDNMIIEV VSSNGDLPPL HLHPITAATN PHQMILGESS  60
GDDNHEVKAP KKRAETWVQD ETRSLIAFRR EMDGLFNTSK SNKHLWEQIS TKMREKGFDR  120
SPTMCTDKWR NLLKEFKKAK HQDRGSGSAK MSYYKEIDEI LRGRNKNSQY KCPTPKVDSY  180
MQFSDKGFED TSISFGPVEA SARPTLNLER RLDHDGHPLA IAAADAVAAS GVPPWNWRET  240
PGNGAESQSF GGRVISVKSG DYTRRIGIDG TTDAIREAIK SAFRLRTKRA FWLEDEDQII  300
RALDREMPLG NYTLHLDEGL AIKVCLYDQS DHMPVHTEEK IFYTEDDYRD FLSRRGWTCL  360
REFDGYRNID SMDDLQHDAI YRGVSRVESV RLKILAMQSE SVPSSIAGDI VFFSVISSFP  420
GKSKDYKILF LGYVTFHPWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-51	71	156	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011029630.1	0.0	PREDICTED: trihelix transcription factor GT-1 isoform X1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	B9HLA7	0.0	B9HLA7_POPTR; Trihelix family protein
STRING	POPTR_0008s17980.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]