PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008496.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 611aa    MW: 68847.6 Da    PI: 5.3867
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008496.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like24.75.2e-08220244125
      G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                  k+r++W+ +LH++Fv+av+q+G   
  CCG008496.1 220 KARVVWSVDLHQKFVKAVNQIGFDT 244
                  68*******************7554 PP
2G2-like38.23.1e-122642912855
      G2-like  28 tPktilelmkvkgLtlehvkSHLQkYRl 55 
                   Pk+il++m+v+ Lt+e+v+SHLQkYRl
  CCG008496.1 264 GPKKILDMMNVPWLTRENVASHLQKYRL 291
                  5**************************8 PP
3Response_reg48.16.4e-172194174
                  EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEE CS
  Response_reg  1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpi 74
                  vl+vdD+p+ +++l+++l+k  y ev+++  +++al+ll+e++  +D+++ D+ mp+mdG++ll+     e++lp+
   CCG008496.1 21 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALNLLRERKggYDIVISDVYMPDMDGFKLLELVGL-EMDLPV 94
                  89*********************.***************999999******************987633.335665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.83E-2918161IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.8E-4018172No hitNo description
SMARTSM004485.8E-2419150IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.96720154IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.6E-132195IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.02E-2522154No hitNo description
SuperFamilySSF466893.76E-13218295IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-25218296IPR009057Homeodomain-like
PfamPF002494.5E-6222290IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.3E-10263291IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MMENNGFSSP RNDSFPAGLR VLVVDDDPTW LKILEKMLKK CSYEVTTCGL ARDALNLLRE  60
RKGGYDIVIS DVYMPDMDGF KLLELVGLEM DLPVISRFFS LTLEFYFNAN IFYLLMSVDG  120
ETSRVMKGVQ HGACDYLLKP IRMKELRNIW QHVFRKKIHE VRDIEILEGN ESFQMTRNGS  180
DQYEDGHVLC GEDLTSINKR KHFESKHDEK DTGDSISTKK ARVVWSVDLH QKFVKAVNQI  240
GFDTTSLPSF DGAMTGSVCL AEVGPKKILD MMNVPWLTRE NVASHLQKYR LYLSRLQKEN  300
DFKNPAGGIK QSDSPLRDSA GSFGSQNSIN LQHNDVSNGS YIFSGSSLVV HNGDPRSHDS  360
DRKRLVSTPV EEPKRTLTVN VPNPRIPRSS QMEFGQPLAP PQSEVDFGAL DSTFPTKYPW  420
CGIQLKKEHN PLHLNDEFSH LPLPGQKQLT QADYPQPAPA ISSAPSSTPS HNEYRSNVNH  480
ARSTAIAVDS SPIQTKTDVA NHQAVEPNSK STPSLENQGF NMNSITEFES SRKNINLGML  540
PFTTLEEDLQ VCWVPGDCYM NLGLQNIEVL EYFDPGLITD VPVNLNDGLR FDYEFYDPTE  600
YSLIDQSLFI A
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081450.0FN908145.1 Populus x canadensis mRNA for putative B-type response regulator 14 (rr14 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029605.10.0PREDICTED: two-component response regulator ARR11-like isoform X1
TrEMBLA0A2K1ZJ940.0A0A2K1ZJ94_POPTR; Two-component response regulator
STRINGPOPTR_0008s18130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-122response regulator 11