 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
CCG008398.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 355aa MW: 41167.7 Da PI: 7.8928 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG008398.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 185.6 | 3.5e-57 | 8 | 315 | 4 | 328 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
L+ cA+a++ g l a++lLa+++ l s++ ++ +++y +eAL +r +r + p++ s ++ + P+++f+ +t +
CCG008398.1 8 ILMVCARAIEGGRLDFADSLLAEIQSLPSKEEsIWTRNVVKYCAEALVRRAYRIRP------PCTLPS---LPLLCEPFE--YMYEPFYEFATITSKH 94
6999***********************999983567779**************222......333332...222223333..3456************ PP
GRAS 101 aIleavege.ervHiiDfdisqGlQ.WpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeL 194
aI +a+++ +r+HiiDf+i+ + W +L+++L ++ g s+ iT++ ++ s+++++l++ +er ++f ++e + l+++r +d+ +++L
CCG008398.1 95 AIADALNSGyKRLHIIDFSIMFDFWwWNSLIKELKEQCVGLQSVLITTITPKLSKHSDRLRKNQERARQFGG---TNLELRQLLCNRPDDIvnCISKL 189
******8766***********99862679**********************9999***************85...57888888888777775558999 PP
GRAS 195 rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
r k+ +E ++Vn+ + lh+ll++++++e+ vL+ vk+l+ +++v+veq+a++ns+++ er+ ++++yys++f+sle+ + +++ E +++
CCG008398.1 190 RRKRkDEIVVVNWNFTLHKLLAQDGAMEQ----VLSKVKDLEVDIMVIVEQDANLNSPDLSERLEQSFQYYSTIFESLEKA----AFTKSLWET-YFR 278
99988************************....*********************************************998....345555555.5** PP
GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvp 328
r+i nvvaceg +r+er e++++W++rl++aGF pvp
CCG008398.1 279 RQIGNVVACEGVDRVERIESFAQWKNRLSQAGFCPVP 315
**********************************997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MASPLSCILM VCARAIEGGR LDFADSLLAE IQSLPSKEES IWTRNVVKYC AEALVRRAYR 60
IRPPCTLPSL PLLCEPFEYM YEPFYEFATI TSKHAIADAL NSGYKRLHII DFSIMFDFWW 120
WNSLIKELKE QCVGLQSVLI TTITPKLSKH SDRLRKNQER ARQFGGTNLE LRQLLCNRPD 180
DIVNCISKLR RKRKDEIVVV NWNFTLHKLL AQDGAMEQVL SKVKDLEVDI MVIVEQDANL 240
NSPDLSERLE QSFQYYSTIF ESLEKAAFTK SLWETYFRRQ IGNVVACEGV DRVERIESFA 300
QWKNRLSQAG FCPVPQLVYK LKIDFGLNFD DHRIEAKDGH ILLRRILVPA ILSYF
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC213918 | 0.0 | AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence. |
